Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0788
         (690 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC006807-1|AAH06807.1|  179|Homo sapiens peptidyl-tRNA hydrolase...    99   7e-21
AL137322-1|CAB70696.1|  176|Homo sapiens hypothetical protein pr...    99   7e-21
AF151905-1|AAD34142.1|  179|Homo sapiens CGI-147 protein protein.      99   7e-21

>BC006807-1|AAH06807.1|  179|Homo sapiens peptidyl-tRNA hydrolase 2
           protein.
          Length = 179

 Score =   99 bits (238), Expect = 7e-21
 Identities = 51/126 (40%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
 Frame = +2

Query: 161 GLSCGICIGLSI---FAI---RKYMKMFSNASETVKKFVSNEEYKLVLVVRTDLSMGKGK 322
           G++CG+C+G S+   F +    K  K  ++          + EYK++LVVR DL MGKGK
Sbjct: 22  GVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILGDSGEYKMILVVRNDLKMGKGK 81

Query: 323 IAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQAKVALKIDSLEEIKKIADNAKKMGLITS 502
           +AAQC HAAV A+++  +++PE LK W+  GQ KV +K    E +  +  +AK +GL  S
Sbjct: 82  VAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVS 141

Query: 503 LIRGCG 520
           LI+  G
Sbjct: 142 LIQDAG 147



 Score = 63.3 bits (147), Expect = 8e-10
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +3

Query: 513 DAGRTQIAPNSITVLGVGPAPKDIIDKVTGHLKL 614
           DAGRTQIAP S TVLG+GP P D+IDKVTGHLKL
Sbjct: 145 DAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178


>AL137322-1|CAB70696.1|  176|Homo sapiens hypothetical protein
           protein.
          Length = 176

 Score =   99 bits (238), Expect = 7e-21
 Identities = 51/126 (40%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
 Frame = +2

Query: 161 GLSCGICIGLSI---FAI---RKYMKMFSNASETVKKFVSNEEYKLVLVVRTDLSMGKGK 322
           G++CG+C+G S+   F +    K  K  ++          + EYK++LVVR DL MGKGK
Sbjct: 19  GVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILGDSGEYKMILVVRNDLKMGKGK 78

Query: 323 IAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQAKVALKIDSLEEIKKIADNAKKMGLITS 502
           +AAQC HAAV A+++  +++PE LK W+  GQ KV +K    E +  +  +AK +GL  S
Sbjct: 79  VAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVS 138

Query: 503 LIRGCG 520
           LI+  G
Sbjct: 139 LIQDAG 144



 Score = 63.3 bits (147), Expect = 8e-10
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +3

Query: 513 DAGRTQIAPNSITVLGVGPAPKDIIDKVTGHLKL 614
           DAGRTQIAP S TVLG+GP P D+IDKVTGHLKL
Sbjct: 142 DAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 175


>AF151905-1|AAD34142.1|  179|Homo sapiens CGI-147 protein protein.
          Length = 179

 Score =   99 bits (238), Expect = 7e-21
 Identities = 51/126 (40%), Positives = 76/126 (60%), Gaps = 6/126 (4%)
 Frame = +2

Query: 161 GLSCGICIGLSI---FAI---RKYMKMFSNASETVKKFVSNEEYKLVLVVRTDLSMGKGK 322
           G++CG+C+G S+   F +    K  K  ++          + EYK++LVVR DL MGKGK
Sbjct: 22  GVACGMCLGWSLRVCFGMLPKSKTSKTHTDTESEASILGDSGEYKMILVVRNDLKMGKGK 81

Query: 323 IAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQAKVALKIDSLEEIKKIADNAKKMGLITS 502
           +AAQC HAAV A+++  +++PE LK W+  GQ KV +K    E +  +  +AK +GL  S
Sbjct: 82  VAAQCSHAAVSAYKQIQRRNPEMLKQWEYCGQPKVVVKAPDEETLIALLAHAKMLGLTVS 141

Query: 503 LIRGCG 520
           LI+  G
Sbjct: 142 LIQDAG 147



 Score = 63.3 bits (147), Expect = 8e-10
 Identities = 28/34 (82%), Positives = 30/34 (88%)
 Frame = +3

Query: 513 DAGRTQIAPNSITVLGVGPAPKDIIDKVTGHLKL 614
           DAGRTQIAP S TVLG+GP P D+IDKVTGHLKL
Sbjct: 145 DAGRTQIAPGSQTVLGIGPGPADLIDKVTGHLKL 178


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,085,341
Number of Sequences: 237096
Number of extensions: 1791135
Number of successful extensions: 3622
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3619
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 7895240574
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)