Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0788
         (690 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical ...    60   1e-09
AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical ...    38   0.009
Z81072-3|CAB03022.1|  486|Caenorhabditis elegans Hypothetical pr...    28   7.2  
Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical p...    28   7.2  
Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical pr...    28   7.2  
U40417-7|AAA81416.1|  103|Caenorhabditis elegans Saposin-like pr...    28   7.2  
AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AF067936-7|AAC19215.1|  316|Caenorhabditis elegans Hypothetical
           protein C24G6.8 protein.
          Length = 316

 Score = 60.5 bits (140), Expect = 1e-09
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
 Frame = +2

Query: 257 VSNEEYKLVLVVRTDLSMGKGKIAAQCCHAAVGAFEKALKKD--PEGLKAWQMTGQAKVA 430
           V+   +K+VLV    L MG GKIAAQ  HA +G + +A+  +     + AW   GQ K+ 
Sbjct: 196 VAGRTHKMVLVANMSLKMGTGKIAAQVGHATLGVYRQAMNSENGQNAIAAWTRHGQVKIV 255

Query: 431 LKIDSLEEIKKIADNAKKMGLITSLIRGCG 520
           +K  S E++  +   AK  G    L++  G
Sbjct: 256 VKGQSTEQLMDLCKVAKDAGCYYYLVQDAG 285



 Score = 32.7 bits (71), Expect = 0.25
 Identities = 19/35 (54%), Positives = 22/35 (62%)
 Frame = +3

Query: 513 DAGRTQIAPNSITVLGVGPAPKDIIDKVTGHLKLL 617
           DAG TQI   S TVLG+    +  +D VTG LKLL
Sbjct: 283 DAGYTQIPAGSRTVLGIFGTVEQ-VDSVTGGLKLL 316


>AC024876-7|AAF60890.4|  211|Caenorhabditis elegans Hypothetical
           protein Y94H6A.7 protein.
          Length = 211

 Score = 37.5 bits (83), Expect = 0.009
 Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
 Frame = +2

Query: 218 KMFSNASETVKKFVSNEEYKLVLVVRTDLS--MG--KGKIAAQCCHAAVGAFEKALKKDP 385
           K F    + +   V+   Y + +++R DL   +G   G +  Q  HAA  A     + DP
Sbjct: 82  KQFDEVLQHIMATVAATSYVMYVILRRDLQTKLGWPLGAVCTQAAHAA-SASMWIFRNDP 140

Query: 386 EGLKAW--QMTGQAKVALKIDSLEEIKKIAD 472
              +A+   +    KV L +DS EEIKK+AD
Sbjct: 141 N-TEAYTSNLDSMHKVTLGVDSEEEIKKVAD 170


>Z81072-3|CAB03022.1|  486|Caenorhabditis elegans Hypothetical
           protein F30A10.4 protein.
          Length = 486

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 2/48 (4%)
 Frame = -2

Query: 341 DSIELLFCLYPYLGLFGQLEPICTL--HSIQTF*QFHWH*KTSSCTFE 204
           D + ++     YLGL GQ+E  CT+    I T  Q HWH + S   ++
Sbjct: 353 DEMMVMTLFENYLGLDGQMESNCTVAKEDILTR-QTHWHLEQSDGLYQ 399


>Z66494-10|CAF31472.1|  500|Caenorhabditis elegans Hypothetical
           protein C34C6.6b protein.
          Length = 500

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 AVGAFEKALKKDPEGLKAWQMTGQAKVALKIDSL 448
           A+ A+E A++KDP+  +AW   G A    + D L
Sbjct: 235 AMLAYEAAVQKDPQDARAWCKLGLAHAENEKDQL 268


>Z66494-9|CAA91260.1|  502|Caenorhabditis elegans Hypothetical
           protein C34C6.6a protein.
          Length = 502

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 347 AVGAFEKALKKDPEGLKAWQMTGQAKVALKIDSL 448
           A+ A+E A++KDP+  +AW   G A    + D L
Sbjct: 237 AMLAYEAAVQKDPQDARAWCKLGLAHAENEKDQL 270


>U40417-7|AAA81416.1|  103|Caenorhabditis elegans Saposin-like
           protein family protein4 protein.
          Length = 103

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 20/78 (25%), Positives = 32/78 (41%)
 Frame = +2

Query: 314 KGKIAAQCCHAAVGAFEKALKKDPEGLKAWQMTGQAKVALKIDSLEEIKKIADNAKKMGL 493
           +  +  Q C  AV  ++ ++ KD  G+K    T   K+   I    +  +   N K   +
Sbjct: 23  RNSLGCQMCELAVKKYDGSVDKDVNGIKKDFDTECKKLFHSIPFAPQECEHYVNTKLDPI 82

Query: 494 ITSLIRGCGPYPDCTKFN 547
           I  L  G  P   CTK +
Sbjct: 83  IKELESGTAPKDVCTKLH 100


>AF003390-4|AAB54273.1| 1165|Caenorhabditis elegans Hypothetical
           protein R155.3 protein.
          Length = 1165

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +2

Query: 404 QMTGQAKVALKIDSLEEIKKIADNAKKMGLITSLIRGCG 520
           Q+  Q K   K+ +  E  K+ +NAKK+G I  ++   G
Sbjct: 279 QLPAQLKALEKLMNFSEQLKLPENAKKLGNIIEIVNQDG 317


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,905,107
Number of Sequences: 27780
Number of extensions: 311405
Number of successful extensions: 827
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1581836700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)