Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0788
         (690 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc fi...    23   2.7  
U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor...    22   4.8  
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    21   8.4  

>AB208108-1|BAE72140.1|   92|Apis mellifera Broad complex zinc
           finger domain-Z3 isoform protein.
          Length = 92

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = +2

Query: 530 DCTKFNNSFGCRTSTERHYRQSH 598
           +C     +F C  S +RH++  H
Sbjct: 7   ECPYCRRNFSCYYSLKRHFQDKH 29


>U15956-1|AAA67444.1|  129|Apis mellifera hymenoptaecin precursor
           protein.
          Length = 129

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -2

Query: 329 LLFCLYPYLGLFGQLEPICTLHSIQT 252
           +LFC   Y+    +LEP  T+  I T
Sbjct: 7   VLFCAVAYVSAQAELEPEDTMDYIPT 32


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 641 TNFENKLSQQLKVTGDFVYNVFRCWSYT 558
           TNF+  ++ +  V  D  YN    W +T
Sbjct: 48  TNFDKGINWRSYVVCDVAYNNVNNWLWT 75


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,044
Number of Sequences: 438
Number of extensions: 3792
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21073995
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)