Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0787
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual        27   2.9  
SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.8  
SPBPB2B2.16c |||MFS family membrane transporter |Schizosaccharom...    27   3.8  
SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|ch...    27   3.8  
SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyce...    26   5.0  
SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain protein|Schizosacchar...    25   8.8  

>SPCC622.06c |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 122

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = -2

Query: 548 LVFSLALFHRTVTCEL*SVFGIIFSKHTLICHAVTI 441
           ++F ++LF++   CEL +V   I +   L+C  V +
Sbjct: 59  IIFFISLFNKNTYCELPAVADAIINSIALVCIIVIL 94


>SPBC1348.05 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -2

Query: 566 DPVELSLVFSLALFHRTVTCEL*SVFGIIFSKHTLICHAVTINDVLNSINQYL 408
           +PV L L     L    +   +     I+ S+  LIC A TI  +   IN  L
Sbjct: 242 EPVALRLTGKQLLIKLLILLSMKKPISILLSQPILICVACTIGSIYGMINLVL 294


>SPBPB2B2.16c |||MFS family membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -2

Query: 566 DPVELSLVFSLALFHRTVTCEL*SVFGIIFSKHTLICHAVTINDVLNSINQYL 408
           +PV L L     L    +   +     I+ S+  LIC A TI  +   IN  L
Sbjct: 242 EPVALRLTGKQLLIKLLILLSMKKPISILLSQPILICVACTIGSIYGMINLVL 294


>SPAC750.02c |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 485

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -2

Query: 566 DPVELSLVFSLALFHRTVTCEL*SVFGIIFSKHTLICHAVTINDVLNSINQYL 408
           +PV L L     L    +   +     I+ S+  LIC A TI  +   IN  L
Sbjct: 242 EPVALRLTGKQLLIKLLILLSMKKPISILLSQPILICVACTIGSIYGMINLVL 294


>SPBC14F5.07 |||ER-localized ubiquitin ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1242

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = +1

Query: 526 NRAKLKTND-NSTGSIPVPHSNILHSFHTDY 615
           N+  L  ND NS+ S+PV   N LHS + DY
Sbjct: 293 NQPALDLNDANSSNSVPVEF-NSLHSQNVDY 322


>SPCC1827.07c ||SPCP1E11.01c|SPX/EXS domain
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 682

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 721 RRFAGSLLNFPFMLFFVNYTFSIDGNILF*LLRHH 617
           RR++ SL +FP ++  + Y F+I   +   L R H
Sbjct: 485 RRYSDSLKSFPHLVNALKYIFNILAQMFLSLWRIH 519


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,923,068
Number of Sequences: 5004
Number of extensions: 57598
Number of successful extensions: 159
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 159
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)