Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0787
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   4e-04
SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)                  29   5.4  

>SB_34296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3464

 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 20/50 (40%), Positives = 30/50 (60%)
 Frame = +3

Query: 12   AGRRSDHIDDILFAEWRRCEPEWTSLHTDEATVKNQIFESIFQRILTETI 161
            AG++ D +D IL  E R  EP+W     DE  VK Q+ ++I   +L+ET+
Sbjct: 3396 AGKK-DAVDAILIQELREEEPQWVDYDDDELAVKFQVADAILDSLLSETV 3444


>SB_13184| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1297

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -2

Query: 356 QILKNANTNDIDIIHKIDNLL*IYLTKDLIEVKFTNYTI 240
           Q++KN  T +++  H+   ++  Y TK   E++F +YT+
Sbjct: 215 QVVKNGLTTNVNTQHQSITVMKEYETKSFEELRFEDYTL 253


>SB_20039| Best HMM Match : LRR_1 (HMM E-Value=0.0061)
          Length = 608

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 22/89 (24%), Positives = 43/89 (48%), Gaps = 1/89 (1%)
 Frame = -2

Query: 464 LICHAVTINDVLNSINQYL*LILNGDFLETNSYSYHQILKNANTND-IDIIHKIDNLL*I 288
           ++C    ++DV  S N    L ++GD L  +S +  ++   A   + +DI H + NL  +
Sbjct: 390 MLCITGAVDDVEASGNHLRRLEISGDCLNPDSIALREVSLTARDCELVDICH-MPNLSTV 448

Query: 287 YLTKDLIEVKFTNYTILKIVM*RSLGIVV 201
            L  D I + F +  I +++  R    ++
Sbjct: 449 NLRCDTINLMFLSDCIDELIQTRCATCII 477


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,806,452
Number of Sequences: 59808
Number of extensions: 382907
Number of successful extensions: 821
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 821
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)