Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0787
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z99709-3|CAB54198.1|  231|Caenorhabditis elegans Hypothetical pr...    28   8.2  

>AF039044-1|AAG24127.1|  272|Caenorhabditis elegans Hypothetical
           protein F48G7.13 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +2

Query: 332 LCLRFLKFDDRSKSLFLKNRRLKLITSI 415
           +CL+  ++ D +K LF KNR L  I  I
Sbjct: 43  ICLKIQEYSDFNKKLFSKNRELSHIARI 70


>Z99709-3|CAB54198.1|  231|Caenorhabditis elegans Hypothetical
           protein C47B2.2b protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -2

Query: 353 ILKNANTNDIDIIHKIDNLL*IYLTKDLIEVKFTNYTI 240
           ILK+ +TN  D +   D L+ + + + L  + FT +T+
Sbjct: 52  ILKDRSTNHSDFVFNADRLMRLVIEECLNHLPFTEHTV 89


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,003,782
Number of Sequences: 27780
Number of extensions: 312995
Number of successful extensions: 775
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 751
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 775
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)