Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0787
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   5.4  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   5.4  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   7.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   7.1  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   9.4  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   9.4  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 678 NNINGKFNNDPANLRSFAFKTYLHN 752
           NN N  +NN+  N     +K Y+ N
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIIN 123


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = +3

Query: 678 NNINGKFNNDPANLRSFAFKTYLHN 752
           NN N  +NN+  N     +K Y+ N
Sbjct: 99  NNYNNNYNNNYNNNYKKLYKNYIIN 123


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 133 MLSKI*FLTVASSVCSEVHSGSQRRHSAN 47
           MLSK+  L   +++C    +    RH+A+
Sbjct: 1   MLSKVVLLVALAAICGAQGASYAGRHTAD 29


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -3

Query: 133 MLSKI*FLTVASSVCSEVHSGSQRRHSAN 47
           MLSK+  L   +++C    +    RH+A+
Sbjct: 1   MLSKVVLLVALAAICGAQGASYAGRHTAD 29


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 627 SNQNRILPSMEKV*LTKNNINGKFNNDPANLRSFAFKTY 743
           S + +I+ S+    +  NN    +NN+  N  ++  K Y
Sbjct: 75  SREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/39 (25%), Positives = 19/39 (48%)
 Frame = +3

Query: 627 SNQNRILPSMEKV*LTKNNINGKFNNDPANLRSFAFKTY 743
           S + +I+ S+    +  NN    +NN+  N  ++  K Y
Sbjct: 75  SREPKIISSLSNNTIHNNNYKYNYNNNNYNNNNYNKKLY 113


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,936
Number of Sequences: 438
Number of extensions: 4364
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)