Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0787
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g32540.1 68414.m04016 zinc finger protein, putative similar t...    29   4.4  
At1g65985.1 68414.m07487 expressed protein contains Pfam profile...    28   7.7  

>At1g32540.1 68414.m04016 zinc finger protein, putative similar to
           zinc-finger protein Lsd1 [Arabidopsis thaliana]
           gi|1872521|gb|AAC49660
          Length = 187

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +2

Query: 515 QFYEIELN*KLMIIQPDPFQFRIPIFCIHFTLIIVVSK*SK*NITINGKS 664
           QF  + +     II P+P  F   +F IH  ++ +V K +K N+   G +
Sbjct: 13  QFVLLFMGKNCSIIFPEPHLFISHVFIIHLNVLFLVKKINKNNLRFVGST 62


>At1g65985.1 68414.m07487 expressed protein contains Pfam profile
           PF03140: Plant protein of unknown function
          Length = 456

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 111 KNQIFESIFQRILTETIDEYKKTVMCDSKPDHN 209
           K   FES  +R+  +TI+E +KT+  + K   N
Sbjct: 73  KKTYFESFTKRVGEDTIEEMRKTIQTEEKNIRN 105


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,473,246
Number of Sequences: 28952
Number of extensions: 267728
Number of successful extensions: 620
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)