Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0784
         (774 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    48   7e-08
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                46   3e-07
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    35   7e-04
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.2  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   3.2  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   7.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 48.4 bits (110), Expect = 7e-08
 Identities = 43/157 (27%), Positives = 69/157 (43%)
 Frame = +3

Query: 243 LMLLGKGGFSEVHKAFDLKEQRYTACKVHQLNKDWKEDKKANYIKHALREYNIHKALDHP 422
           L  LG GGF  V +   +      +  + Q+ K    + +    +H + E  I    D  
Sbjct: 370 LATLGVGGFGRV-ELVQIAGDSSRSFALKQMKKAQIVETRQQ--QHIMSEKRIMGEADCD 426

Query: 423 RIVKLYDVFEIDGNSFCTVLEYCNGHDLDFYLKQHKTIPEREARSIVMQVVSALKYLNEI 602
            +VKL+  F+ D      ++E C G +L   L+      +   R     VV A  YL+  
Sbjct: 427 FVVKLFKTFK-DRKYLYMLMEACLGGELWTVLRDKGHFDDGTTRFYTACVVEAFDYLHSR 485

Query: 603 KPPVIHYDLKPGNILLTEGNVCGEIKITDFGLSQVMD 713
              +I+ DLKP N+LL      G +K+ DFG ++ +D
Sbjct: 486 N--IIYRDLKPENLLLDSQ---GYVKLVDFGFAKRLD 517



 Score = 23.4 bits (48), Expect = 2.4
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +3

Query: 66  DEILKLRQSALKKEDADLQLEMEKLERERNLHI 164
           D   +L ++A+   D    LE+ ++ R+R LH+
Sbjct: 87  DRSRELIKAAILANDFMKNLELTQIRRDRGLHV 119


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 46.4 bits (105), Expect = 3e-07
 Identities = 50/157 (31%), Positives = 73/157 (46%)
 Frame = +3

Query: 252 LGKGGFSEVHKAFDLKEQRYTACKVHQLNKDWKEDKKANYIKHALREYNIHKALDHPRIV 431
           LG GGF  V+KA    EQ   A K+ Q  K        N  KHA         L H  IV
Sbjct: 73  LGSGGFGIVYKALYKGEQ--VAAKIIQTEK---YSNMLNSEKHA-------SFLKHSNIV 120

Query: 432 KLYDVFEIDGNSFCTVLEYCNGHDLDFYLKQHKTIPEREARSIVMQVVSALKYLNEIKPP 611
           K+  + +    S  T +E C G  L   L +   I + E   I+  +  AL++ +     
Sbjct: 121 KVLMIEQGASLSLIT-MELC-GTTLQNRLDEAILI-KNERICILKSITCALQFCHNAG-- 175

Query: 612 VIHYDLKPGNILLTEGNVCGEIKITDFGLSQVMDEEN 722
           ++H D+KP NIL+++    G+ K+TDFG S ++   N
Sbjct: 176 IVHADVKPKNILMSKN---GQPKLTDFGSSVLIGAPN 209


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 35.1 bits (77), Expect = 7e-04
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +3

Query: 540 EREARSIVMQVVSALKYLNEIKPPVIHYDLKPGNILLTEGNVCGEIKITDFGLS 701
           E +A   + Q++ ++ + +     V+H DLKP N+LL        +K+ DFGL+
Sbjct: 8   EADASHCIQQILESVHHCHH--NGVVHRDLKPENLLLASKAKGAAVKLADFGLA 59



 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 593 QIL*C*HHLHHNG 555
           QIL   HH HHNG
Sbjct: 17  QILESVHHCHHNG 29


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -3

Query: 79  LRISSAS*YSW*VMLGSGSG 20
           L +SSA  ++W V+L SG G
Sbjct: 608 LNLSSAVWFAWGVLLNSGIG 627


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -2

Query: 608 WFYFVQIL*C*HHLHHNGTRLTLR 537
           W     I  C HHL H G  + +R
Sbjct: 561 WMALKMIQACSHHLTHKGKPIRMR 584


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 21.8 bits (44), Expect = 7.3
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = -2

Query: 575 HHLHHNGTRLTLRDCFVLFEIKVEIMSITV 486
           +HL+ N T L  RD        +EI++ TV
Sbjct: 462 YHLYTNLTALRKRDVLKKGNFTIEILNKTV 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 222,346
Number of Sequences: 438
Number of extensions: 4625
Number of successful extensions: 11
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24275400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)