Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0781
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)             395   e-110
SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)      30   1.6  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_11242| Best HMM Match : MAM (HMM E-Value=0)                         29   4.9  
SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)            28   8.6  
SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_53271| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 687

 Score =  395 bits (973), Expect = e-110
 Identities = 175/235 (74%), Positives = 205/235 (87%)
 Frame = +1

Query: 4    LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
            +KRLNAPK WMLDKL GV+APRPSTGPHKLRECLPL+IFLRNRLKYAL G EV KIVKQR
Sbjct: 433  MKRLNAPKHWMLDKLSGVFAPRPSTGPHKLRECLPLIIFLRNRLKYALNGEEVKKIVKQR 492

Query: 184  LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
            LIK+DGKVRTD TYPAGFMDVV+I+KT E FRL+YDVKGRF +HRIT EEAKYKL +V+R
Sbjct: 493  LIKIDGKVRTDTTYPAGFMDVVTIDKTGENFRLLYDVKGRFAVHRITAEEAKYKLGRVRR 552

Query: 364  VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
            V  G K VPY+VTHD RTIRYPDP IKVND++ +DI T K++D+IKF++GN+ M+ GGRN
Sbjct: 553  VDVGAKGVPYIVTHDARTIRYPDPNIKVNDTVVIDIKTGKVIDYIKFDTGNMAMVVGGRN 612

Query: 544  LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKG 708
            +GRVG +  RE+H GSFDIVH+KD+TGH FATRL N+F+IGKG K Y+SLP+GKG
Sbjct: 613  MGRVGMVTHREKHAGSFDIVHVKDATGHQFATRLTNIFVIGKGNKPYVSLPKGKG 667


>SB_6632| Best HMM Match : FAD_binding_4 (HMM E-Value=1.70006e-41)
          Length = 482

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 17/72 (23%), Positives = 35/72 (48%)
 Frame = +1

Query: 310 IHRITPEEAKYKLCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIM 489
           I  +TP+    K C+V R++TGP    +++  +G      +  +++    ++ +  + + 
Sbjct: 287 IRMVTPQGTVEKSCQVPRMSTGPDLHHFIMGSEGTLGVITEVTLRIRPVPEIRVYGSVV- 345

Query: 490 DFIKFESGNLCM 525
            F  FE G  CM
Sbjct: 346 -FPDFEKGVACM 356


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/56 (19%), Positives = 28/56 (50%)
 Frame = +1

Query: 136 KYALTGNEVLKIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGR 303
           +Y L  ++   + +  L++  G +   P+YP+  ++  ++  +N+LF    +   R
Sbjct: 596 EYWLMASQGQHVSESTLVRGRGDILISPSYPSALLETTTLITSNQLFNTFIESSTR 651


>SB_11242| Best HMM Match : MAM (HMM E-Value=0)
          Length = 348

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/20 (60%), Positives = 16/20 (80%), Gaps = 2/20 (10%)
 Frame = +3

Query: 123 EES--SEVCFDRKRSPENCE 176
           EES  +E+C DRKR P++CE
Sbjct: 76  EESRYNELCHDRKRGPDDCE 95


>SB_41068| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 141

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 6/45 (13%)
 Frame = -1

Query: 200 PSTFMRRCFTIFRTSFPVKAYFRRFLRK------ITRGKHSRNLW 84
           PS++    F +FRT FP   +  RF R+      IT     ++LW
Sbjct: 84  PSSYNGHQFLVFRTDFPFSKHKNRFKRRTKYLYVITTSTKHQHLW 128


>SB_22237| Best HMM Match : Tir_receptor_C (HMM E-Value=3.8)
          Length = 427

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = -3

Query: 600 NVEGAGMSLAGHDGAHTPQVTASRDHTQVPRLKLDEVHNLRSCNV 466
           NV  +G S    D + + Q+T +   +++PRL  D+   +R  N+
Sbjct: 292 NVGSSGSSEIQQDSSKSGQITGNTTTSRIPRLAKDKKTQMRLRNI 336


>SB_20359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4700

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
 Frame = +1

Query: 328  EEAKYKLCKVKRVATGPKNVPYLVTHDG---RTIRYPDPLIKVNDSIQLDIATTKIMDFI 498
            E+A   +C++ R+   P+    LV   G   +++      I   +  Q+ +     +  +
Sbjct: 2971 EDAMQHVCRINRILESPRGNALLVGVGGSGKQSLARLAAFISALEVFQITLRKGYGIPDM 3030

Query: 499  KFESGNLCMITGGRNLGRV 555
            K +  NLC   G +N+G V
Sbjct: 3031 KLDLANLCTKAGLKNIGTV 3049


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,295,357
Number of Sequences: 59808
Number of extensions: 585843
Number of successful extensions: 1789
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1783
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)