Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0781
         (710 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p pro...   420   e-117
AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-P...   420   e-117
AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-P...   420   e-117
D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal prot...   414   e-116
BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p pro...    30   3.6  
AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p pro...    30   3.6  
AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA...    30   3.6  
AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    29   8.2  
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    29   8.2  
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    29   8.2  

>BT011369-1|AAR96161.1|  261|Drosophila melanogaster RE57333p
           protein.
          Length = 261

 Score =  420 bits (1034), Expect = e-117
 Identities = 192/235 (81%), Positives = 211/235 (89%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QR
Sbjct: 9   LKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQR 68

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
           L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
              G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRN
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKG 708
           LGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKG 243


>AE014296-2240|AAF49846.1|  261|Drosophila melanogaster CG11276-PB,
           isoform B protein.
          Length = 261

 Score =  420 bits (1034), Expect = e-117
 Identities = 192/235 (81%), Positives = 211/235 (89%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QR
Sbjct: 9   LKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQR 68

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
           L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
              G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRN
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKG 708
           LGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKG 243


>AE014296-2239|AAF49847.1|  261|Drosophila melanogaster CG11276-PA,
           isoform A protein.
          Length = 261

 Score =  420 bits (1034), Expect = e-117
 Identities = 192/235 (81%), Positives = 211/235 (89%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+IFLRNRLKYAL G EV KIV QR
Sbjct: 9   LKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLIFLRNRLKYALNGAEVTKIVMQR 68

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
           L+KVDGKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVDGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
              G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRN
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKG 708
           LGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKG 243


>D16257-1|BAA03786.1|  261|Drosophila melanogaster ribosomal protein
           S4 protein.
          Length = 261

 Score =  414 bits (1020), Expect = e-116
 Identities = 190/235 (80%), Positives = 209/235 (88%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRL APKAWMLDKLGGV+APRPSTGPHKLRE LPL+ FLRNRLKYAL G EV KIV QR
Sbjct: 9   LKRLAAPKAWMLDKLGGVFAPRPSTGPHKLRESLPLLTFLRNRLKYALNGAEVTKIVMQR 68

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
           L+KV GKVRTDPTYPAG+MDV+++EKT E FRL+YDVKGRF IHRI+ EEAKYKLCKVK+
Sbjct: 69  LVKVYGKVRTDPTYPAGYMDVITLEKTGEFFRLVYDVKGRFVIHRISAEEAKYKLCKVKK 128

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
              G K VP+LVTHDGRTIRYPDPLI  NDS+Q+DIA+ KI D+IKF+SGNLCMITGGRN
Sbjct: 129 TQLGAKGVPFLVTHDGRTIRYPDPLIHANDSVQVDIASGKITDYIKFDSGNLCMITGGRN 188

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKG 708
           LGRVGT+V+RERHPGSFDIVHIKDS GH FATRL NVFIIGKG K YISLP+GKG
Sbjct: 189 LGRVGTVVNRERHPGSFDIVHIKDSQGHVFATRLTNVFIIGKGNKPYISLPKGKG 243


>BT021421-1|AAX33569.1| 1098|Drosophila melanogaster LD02690p
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 15  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 191
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AY051840-1|AAK93264.1|  561|Drosophila melanogaster LD34444p
           protein.
          Length = 561

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 15  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 191
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 18  KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 74


>AE013599-2039|AAF58149.3| 1098|Drosophila melanogaster CG8155-PA
           protein.
          Length = 1098

 Score = 29.9 bits (64), Expect = 3.6
 Identities = 19/59 (32%), Positives = 29/59 (49%)
 Frame = +3

Query: 15  KRSQSMDVGQTWRCVCTETVNRSPQVARVLAPGDFPEESSEVCFDRKRSPENCETTPHK 191
           K  QS+D  +    +     NR+ ++ + L+ G+  E+     FDRK SP   ET P K
Sbjct: 555 KVHQSLDESKMLALIEGALDNRNVKLEQNLSAGEETEDDD--VFDRKESPSFLETNPFK 611


>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipped-B
            protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 417  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 259
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
            isoform F protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 417  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 259
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
            isoform E protein.
          Length = 2077

 Score = 28.7 bits (61), Expect = 8.2
 Identities = 21/55 (38%), Positives = 31/55 (56%), Gaps = 2/55 (3%)
 Frame = -3

Query: 417  GAAIMRY-QVRNILRSGRH-TLDFTQLVLSLLRGDTVDCESALNIID*TKQFISL 259
            G  ++RY   + I +S R  +LD+  +V + LR DTV+    +NIID   Q I L
Sbjct: 888  GTMLVRYVSDKGIEQSIRLVSLDYLGIVAARLRKDTVESRCRVNIIDSMIQSIKL 942


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,745,279
Number of Sequences: 53049
Number of extensions: 871273
Number of successful extensions: 2925
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2922
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3149551053
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)