Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0781
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   332   1e-91
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    34   0.087
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.3  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.3  
Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical pr...    28   5.7  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  332 bits (817), Expect = 1e-91
 Identities = 155/235 (65%), Positives = 184/235 (78%)
 Frame = +1

Query: 4   LKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIVKQR 183
           LKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+ QR
Sbjct: 8   LKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKILTQR 67

Query: 184 LIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCKVKR 363
           +++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLCKVK 
Sbjct: 68  VVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCKVKS 127

Query: 364 VATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCMITGGRN 543
           V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  +TGGRN
Sbjct: 128 VRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTGGRN 187

Query: 544 LGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNVFIIGKGTKAYISLPRGKG 708
           +GRVG I  RER PG+ DI+HIKDS GH+FATR++NVF+IGKG KA +SLP G G
Sbjct: 188 VGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNVFVIGKGNKALVSLPTGAG 242


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 34.3 bits (75), Expect = 0.087
 Identities = 20/55 (36%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +3

Query: 549 ACGHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGH 710
           A  HH    E      H  H G HGTH  H          GH G  H A A  GH
Sbjct: 464 APAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 518



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 19/52 (36%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGV-HLAAARQGH 710
           HH    E      H  H G HGTH  H          GH G  H A A  GH
Sbjct: 525 HHGHHGEHHHAPAHHGHHGEHGTHHGHHGSHHSPAHHGHHGEHHHAPAHHGH 576



 Score = 32.7 bits (71), Expect = 0.27
 Identities = 23/64 (35%), Positives = 25/64 (39%), Gaps = 3/64 (4%)
 Frame = +3

Query: 528 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH--LRHEVEQRVHNRQGHE-GVHLAAA 698
           HG    G+ G H     T   L H  H G HGTH    H      H+   HE G H   A
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTHHGAHHSPAHHGHHGAHHEHGAH-HGA 701

Query: 699 RQGH 710
             GH
Sbjct: 702 HHGH 705



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 15/39 (38%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
 Frame = +3

Query: 597 HCAHQGLHGTHLRHEVEQR-VHNRQGHEGVHLAAARQGH 710
           H AH   HG H RH  E    H+   H G H      GH
Sbjct: 392 HAAHHDEHGVHHRHHGEHHGTHHSPAHHGEH--GTHHGH 428



 Score = 31.1 bits (67), Expect = 0.81
 Identities = 23/92 (25%), Positives = 30/92 (32%), Gaps = 1/92 (1%)
 Frame = +3

Query: 414 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELVYDHGRP*LGACGHHRVPRETSRL 590
           HH      +  +  H P  H ++ ++G H     E  + H     G  G H         
Sbjct: 497 HHSPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGE--HHHAPAHHGHHGEHGTHHGHHGS 554

Query: 591 LRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 686
               AH G HG H         H   G  GVH
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVH 586



 Score = 30.7 bits (66), Expect = 1.1
 Identities = 17/43 (39%), Positives = 18/43 (41%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 686
           HHR   E        AH G HGTH  H  E   H+   H G H
Sbjct: 402 HHRHHGEHHGTHHSPAHHGEHGTHHGHHGEH--HHAPAHHGHH 442



 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/44 (29%), Positives = 16/44 (36%)
 Frame = +3

Query: 555 GHHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 686
           G H  P        H  H   HG H  H  ++  H+  GH   H
Sbjct: 678 GAHHSPAHHGHHGAHHEHGAHHGAHHGHHDDKENHHHHGHHSKH 721



 Score = 29.1 bits (62), Expect = 3.3
 Identities = 27/105 (25%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
 Frame = +3

Query: 414 HHPLPRPTYQSQRFH-PVRHCNYEDYGLHQV*VWELV-YDHGRP*LGACGHH--RVPRET 581
           HH      +  +  H P  H ++  +G H V       + HG       GHH        
Sbjct: 555 HHSPAHHGHHGEHHHAPAHHGHHGHHGSHGVHHGHHESHGHGHHAPAHHGHHGEHGVHHG 614

Query: 582 SRLLRHCAHQGLHGTHLRHEVEQRVHNRQG--HEGVHLAAARQGH 710
                + AH G HG H  H      H   G  H G H      GH
Sbjct: 615 HHGAGYGAHHGHHGAHHHHAPHHEHHEHHGDHHHGSH--GVHHGH 657



 Score = 28.3 bits (60), Expect = 5.7
 Identities = 15/51 (29%), Positives = 17/51 (33%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVHLAAARQGH 710
           HH      +    H  H G HG H         H   GH   H + A  GH
Sbjct: 409 HHGTHHSPAHHGEHGTHHGHHGEHHHAPAHHGHHESHGHG--HHSPAHHGH 457



 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/43 (30%), Positives = 13/43 (30%)
 Frame = +3

Query: 558 HHRVPRETSRLLRHCAHQGLHGTHLRHEVEQRVHNRQGHEGVH 686
           HH  P           H G HG H  H          GH G H
Sbjct: 631 HHHAPHHEHHEHHGDHHHGSHGVHHGHHGTHHSLAHHGHHGGH 673


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 298 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 429
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 516 LVYDHGRP*LGACGHHRVPRETSRLLRH 599
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 516 LVYDHGRP*LGACGHHRVPRETSRLLRH 599
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>Z81573-1|CAB04625.3|  909|Caenorhabditis elegans Hypothetical
           protein M02G9.1 protein.
          Length = 909

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/32 (40%), Positives = 17/32 (53%), Gaps = 2/32 (6%)
 Frame = -2

Query: 709 CPCRAAARCTPSCP-CRL*TRCS-TSWRRCVP 620
           C C+ A  C P CP   + + CS T  R C+P
Sbjct: 54  CSCQQAPICQPQCPRAEINSDCSATCVRACIP 85


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -1

Query: 455  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 291
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,060,266
Number of Sequences: 27780
Number of extensions: 415371
Number of successful extensions: 1335
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)