Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0779
(633 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 31 0.18
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 28 0.97
SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit ... 27 1.7
SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces pombe... 27 2.3
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb... 27 2.3
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 27 2.3
SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|ch... 27 2.3
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr... 25 6.9
SPAC13F5.06c |sec10||exocyst complex subunit Sec10|Schizosacchar... 25 9.1
SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces pombe... 25 9.1
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 30.7 bits (66), Expect = 0.18
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 7/114 (6%)
Frame = -1
Query: 369 LTSSCPS-----TCGPTPGCT*SFPTRPISLFGMVKVEYIQQYVSITASGI--SSTMQSI 211
L ++CP T GP PG T +PT ++ Y S+++S I +ST+ +
Sbjct: 36 LLAACPQYITIYTNGPVPGTTTIYPTSNVASNTSENYPYTGS-KSLSSSSILSNSTISTS 94
Query: 210 GSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTESSLRSPFTEPKTSNMAGA 49
S V S + + T+ T S T SS+ S T P +S+++ +
Sbjct: 95 SSTPITASVPTSSSILSNSTIPTTSPVPTTSSTPTSSSILSNSTIPSSSSISAS 148
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.3 bits (60), Expect = 0.97
Identities = 18/64 (28%), Positives = 29/64 (45%)
Frame = +1
Query: 412 SSNPVLCSPLLVGKRGKEAASRCWSWILTVPSLKTSASRVVKSYLSTISTRTCTLKTFTL 591
S++ + S + ++S SW T P TS S+V S +++ T TFT
Sbjct: 594 STSVLYTSTPITSPNSTSSSSTQVSWNSTTPITGTSTSKVTSSTSIPLTSTNRTSTTFTS 653
Query: 592 SDSL 603
S S+
Sbjct: 654 STSI 657
>SPBC119.01 |rpn3|SPBPJ4664.07|19S proteasome regulatory subunit
Rpn3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 497
Score = 27.5 bits (58), Expect = 1.7
Identities = 20/64 (31%), Positives = 32/64 (50%)
Frame = -1
Query: 282 VKVEYIQQYVSITASGISSTMQSIGSPMYCRDVTRSENAIKIITVAL*CKRNTLLSMHTE 103
V EYI++ ++ S T+ I + +Y + E + + C RNTLLS+H
Sbjct: 145 VGAEYIKKVIARLQSYDRRTLDQIAAKLYFYYILFFEKCNRSVE----C-RNTLLSVHRT 199
Query: 102 SSLR 91
+SLR
Sbjct: 200 ASLR 203
>SPAPB8E5.09 |||AAA family ATPase Rvb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 456
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/25 (44%), Positives = 17/25 (68%)
Frame = -2
Query: 629 LIKLRTSPYKESESVKVLSVQVRVE 555
L+ +RT PY ESE +L ++ +VE
Sbjct: 359 LLIVRTLPYSESEIRSILQIRAKVE 383
>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1428
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +1
Query: 412 SSNPVLCSPLLVGKRGKEAASRCWSWIL 495
+ NP + + + K+GKEA S W IL
Sbjct: 105 NKNPTSTAHICIDKKGKEAVSYSWDKIL 132
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 27.1 bits (57), Expect = 2.3
Identities = 11/27 (40%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = -3
Query: 289 RDGESRVYPAVR-VHNGERDFINDAVN 212
++G+ ++P+V+ +H GER+ IND V+
Sbjct: 20 KNGQILLHPSVQPLHPGERELINDIVS 46
>SPCC188.13c |dcr1|SPCC584.10c|dicer|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1374
Score = 27.1 bits (57), Expect = 2.3
Identities = 15/38 (39%), Positives = 18/38 (47%)
Frame = +3
Query: 489 DLNCPIVEDECKSGRKKLLVDYFHTNLHTQNFYAFRFF 602
D V +E KS K LL +T LH +Y F FF
Sbjct: 1277 DFGTKCVIEEVKSSHKTLL----NTELHLTKYYGFSFF 1310
>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 583
Score = 25.4 bits (53), Expect = 6.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = -3
Query: 259 VRVHNGERDFINDAVNRVTDVL 194
V NG R+++ DAV R DV+
Sbjct: 499 VESRNGRREYVQDAVRRHGDVI 520
>SPAC13F5.06c |sec10||exocyst complex subunit
Sec10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 25.0 bits (52), Expect = 9.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +3
Query: 516 ECKSGRKKLLVDYFHTNLH 572
E +SG+ + L+D+F TN H
Sbjct: 151 EFRSGKPQTLMDFFRTNNH 169
>SPAC31A2.10 |||RanGTP-binding protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 460
Score = 25.0 bits (52), Expect = 9.1
Identities = 6/25 (24%), Positives = 14/25 (56%)
Frame = +2
Query: 341 PHVEGQDEVKYHKYYQWVCFVLFFQ 415
P ++ D+ K+H+ W+ +F+
Sbjct: 328 PFIKNNDKTKFHQNIDWIALEKYFE 352
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,703,796
Number of Sequences: 5004
Number of extensions: 57433
Number of successful extensions: 183
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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