Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0779
(633 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678 32 0.44
04_01_0067 - 673381-673387,675388-678131 29 4.1
02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203 29 4.1
01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890 29 4.1
09_06_0216 + 21627238-21627834 28 5.4
02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,444... 28 5.4
12_02_1279 + 27510605-27513301 28 7.1
02_05_0181 - 26522849-26522932,26523053-26523184,26523263-265233... 28 7.1
02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,201... 28 7.1
11_01_0316 + 2361904-2362237,2362454-2363178 27 9.4
07_03_1506 - 27161056-27161454 27 9.4
05_01_0091 + 602481-602721,602819-602901,603431-603560,604188-60... 27 9.4
03_05_0865 - 28365430-28367640 27 9.4
01_06_1097 + 34507376-34507395,34509380-34511214,34511263-345115... 27 9.4
>01_06_1415 + 37171380-37171923,37172476-37172666,37173628-37173678
Length = 261
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/42 (40%), Positives = 24/42 (57%)
Frame = +1
Query: 385 SVGLFCVILSSNPVLCSPLLVGKRGKEAASRCWSWILTVPSL 510
SV V ++S+P + PLL+GK G + WSWI+ P L
Sbjct: 39 SVIAMLVSIASHPSIDLPLLLGK-GSNGSFPVWSWIMFSPFL 79
>04_01_0067 - 673381-673387,675388-678131
Length = 916
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = -2
Query: 533 TTRLALVFNDGTVKIQDQHLDAASFPRFPTSSGEHKTGLLERITQN-KPT 387
TT LV++D VK QH + + TS G HK + E+I ++ PT
Sbjct: 223 TTLAKLVYDDAKVK---QHFELRLWASVSTSGGFHKIDITEQILRSANPT 269
>02_05_0004 - 24880826-24882033,24882106-24882276,24882360-24883203
Length = 740
Score = 28.7 bits (61), Expect = 4.1
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = -3
Query: 370 FNFVLSFDMWADAGLHVILSD--AADKSVRDGESRVYPAVR--VHNGERDFINDAVN 212
+ FVLS + AD L V + D SVR G+ R+Y A+ +NG +N N
Sbjct: 33 WTFVLSCNRSADGRLRVYNYEIEVVDVSVRRGQLRIYSAINPWCYNGSTSAMNGQSN 89
>01_06_1374 + 36740860-36741365,36742529-36743003,36743084-36743890
Length = 595
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = -3
Query: 367 NFVLSFDMWA-DAGLHVILSDAADKSVRDGESRV 269
N LSFD W D LH+++ D R+ SRV
Sbjct: 12 NRALSFDDWVPDEALHLVMGHVEDPRDREAASRV 45
>09_06_0216 + 21627238-21627834
Length = 198
Score = 28.3 bits (60), Expect = 5.4
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +1
Query: 493 LTVPSLKTSASRVVKSYLSTISTRTCTLKT 582
LTVPS+ T + V SY++T +T T T T
Sbjct: 160 LTVPSVDTYNTSTVTSYVATDNTSTITSST 189
>02_01_0598 + 4440018-4440070,4440627-4440693,4440794-4440926,
4441075-4441120,4442470-4442521,4442601-4442753,
4443338-4443457,4443549-4443714,4443822-4443934,
4444049-4444120,4444992-4445213,4445270-4445317,
4445639-4445697,4445809-4445887,4445982-4446119,
4446327-4446551,4446643-4447430,4447548-4447723,
4447911-4448169,4448646-4448707,4451055-4451212,
4451618-4451743,4452197-4452260,4452386-4452494,
4452607-4452760,4453055-4453178,4453257-4453333,
4453442-4453494,4453673-4453727,4453833-4454021
Length = 1379
Score = 28.3 bits (60), Expect = 5.4
Identities = 18/63 (28%), Positives = 26/63 (41%)
Frame = +3
Query: 249 WTRTAGYTLLSPSRTDLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFKQSCF 428
W+ Y L + +L A +RI HM + LN+T I FKQ+ F
Sbjct: 1210 WSFEEAYNLSRDHKPELEAERDRIVKAGGFIHMGRINGSLNLTRAIGDM----EFKQNKF 1265
Query: 429 MFP 437
+ P
Sbjct: 1266 LPP 1268
>12_02_1279 + 27510605-27513301
Length = 898
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = +3
Query: 234 SRSPLWTRTAGYTLLSPSRTDLSA 305
SR+P+WT TAG T+L L+A
Sbjct: 91 SRTPVWTATAGTTILQSIVLSLTA 114
>02_05_0181 -
26522849-26522932,26523053-26523184,26523263-26523329,
26523800-26524186,26524259-26524360,26524983-26525132,
26525552-26525636,26525743-26525769,26525858-26526116,
26526659-26526751,26526921-26527013,26527122-26527289,
26527436-26527594,26528214-26528273,26528392-26528487
Length = 653
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 439 LLVGKRGKEAASRCWSWILTVPSLKT 516
+L K+ KE +S CWS I+ P L++
Sbjct: 45 VLESKKRKEVSSSCWSSIIMQPKLES 70
>02_01_0301 + 2011707-2015423,2016982-2017182,2017670-2017786,
2018030-2018122
Length = 1375
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +1
Query: 502 PSLKTSASRVVKSYLSTISTRTCTLKTFTLSDSL 603
PSL+ S R++ S L ++ R CT+ L D L
Sbjct: 1014 PSLELSDRRILPSQLKEVTVRGCTIHDGFLHDDL 1047
>11_01_0316 + 2361904-2362237,2362454-2363178
Length = 352
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +1
Query: 397 FCVILSSNPVLCSPLLVGKRGKEAASRCWSWILTVPSL 510
FCV+ S + + +GKRG + SR ++WI + L
Sbjct: 142 FCVV-SDRDLHINAHFIGKRGADGMSRDFTWIQAIAVL 178
>07_03_1506 - 27161056-27161454
Length = 132
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -3
Query: 295 SVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERD 164
+VRD E P V NG D +++ + +V RR+E R D
Sbjct: 49 AVRDDEDDGAPTVGGRNGGADEVDEDAAKPMEVTPRREEVRGDD 92
>05_01_0091 +
602481-602721,602819-602901,603431-603560,604188-604267,
604353-604442,605019-605143,605702-605762,605839-605889,
605976-606053,606136-606241,606333-606478,607054-607176
Length = 437
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 120 LSMHTESSLRSPFTEPKTSNMAGARRVGRGREYG 19
LS++ S R+P T +SN+ G V R +E G
Sbjct: 46 LSLYASSLPRAPTTPSSSSNLVGLTLVRRAKEKG 79
>03_05_0865 - 28365430-28367640
Length = 736
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/51 (35%), Positives = 24/51 (47%)
Frame = -3
Query: 310 DAADKSVRDGESRVYPAVRVHNGERDFINDAVNRVTDVLSRRDEKRERDQD 158
D++ RD R R + +RD D R D SRRD R+RD+D
Sbjct: 62 DSSSSHHRDSSDRDRDRDRDRDRDRDRDRDRERRRDDD-SRRDRDRDRDRD 111
>01_06_1097 +
34507376-34507395,34509380-34511214,34511263-34511598,
34511800-34513691
Length = 1360
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/23 (56%), Positives = 18/23 (78%), Gaps = 1/23 (4%)
Frame = +1
Query: 385 SVGLFCVILSSNPV-LCSPLLVG 450
S GLF +LSS+PV +C+ LL+G
Sbjct: 64 SPGLFAFLLSSSPVIMCTTLLLG 86
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,907,649
Number of Sequences: 37544
Number of extensions: 386416
Number of successful extensions: 1213
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1177
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1212
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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