Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0779
         (633 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)                33   0.25 
SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)                 31   1.0  
SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.4  
SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.4  
SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)              30   1.8  
SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.5  
SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)                 28   7.2  
SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)                   28   7.2  
SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  
SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.6  

>SB_26761| Best HMM Match : UQ_con (HMM E-Value=1.7e-06)
          Length = 739

 Score = 32.7 bits (71), Expect = 0.25
 Identities = 21/72 (29%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
 Frame = -3

Query: 349 DMWADAGLHVILSDAADKSVRDGESRVYPAVRVHN-GERD-FINDAVNRVTDVLSRRDEK 176
           D W  A       +  D  +  G      A R    GE D  IND  N++ +++S R+  
Sbjct: 494 DEWETASDVSSDEEPRDSIISYGSPEAETAQREQGTGENDDTINDERNKINEIISNRNPG 553

Query: 175 RERDQDNHGGFV 140
           +     NHGG+V
Sbjct: 554 KRVQVTNHGGYV 565


>SB_5795| Best HMM Match : RasGEF (HMM E-Value=5.3e-06)
          Length = 155

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -3

Query: 442 VAGNIKQDCLKE*HKTNPLIIFVIFNFVLS 353
           V G +  +C+KE   T+PL++FV  N  +S
Sbjct: 115 VEGKVHSECIKECRSTSPLLLFVTENATVS 144


>SB_36054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1267

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
 Frame = +1

Query: 370  ISQILSVGLFCVILSSNPVLCSPLLVGKRGKEAASRCWSWIL---TVPSL--KTSASRVV 534
            I  +  V LF  + S N ++CS LL G +    + R WS I+    +PSL  KT  S V 
Sbjct: 961  IDGLFIVSLFDTLTSFN-LVCSSLLAGLQIPSISQRYWSVIIGAVALPSLFIKTFRSLVW 1019

Query: 535  KSYLSTIS 558
             S L T S
Sbjct: 1020 LSLLGTAS 1027


>SB_8533| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 335

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/85 (22%), Positives = 37/85 (43%), Gaps = 1/85 (1%)
 Frame = +2

Query: 179 LVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYSTFTIPNRLIGRVGKDYVQPGVGPHVEGQ 358
           ++T  Q + DP + I+D+     + T   I  T     +++   G+D +     P  +  
Sbjct: 95  IITGNQVLSDPGEDIIDDYHRRSLATPARISLTIITGKKVLSDSGEDLIDILSDPGEDII 154

Query: 359 DEVKY-HKYYQWVCFVLFFQAILFY 430
           D+  +    Y  +CFV  F  ++ Y
Sbjct: 155 DDYHWSFDVYMMMCFVFVFGCLVEY 179


>SB_45078| Best HMM Match : ABC_tran (HMM E-Value=2.6e-36)
          Length = 972

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/95 (23%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
 Frame = +2

Query: 23  YSRPRPTRRAPAMFDVFGSVKGLLKLDSVCIDNNVFRLHYKATVIILIAFSLLVTSRQYI 202
           ++ P PT R+P    +  S+ GL+ + +   +    R ++  T     A++L +  ++++
Sbjct: 648 HTPPPPTDRSPVYSHLSTSLTGLITIRAFQAEQAFIRSYHAYTDFHTGAYALNLGIQRWL 707

Query: 203 GDPIDCI-VDEIPLAVMDTYCWIYSTFTIPNRLIG 304
           G  +D I      LAV  +   + + FTI   ++G
Sbjct: 708 GIRLDIISALFFALAVFTSLLTVEAGFTISASVVG 742


>SB_33539| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 183

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/50 (30%), Positives = 23/50 (46%)
 Frame = -3

Query: 373 IFNFVLSFDMWADAGLHVILSDAADKSVRDGESRVYPAVRVHNGERDFIN 224
           +FN +    +W D       S  A+KS+R  ES  Y  ++VH      +N
Sbjct: 18  LFNNLNDTPLWKDRSFATTFSYVANKSIRKQES--YGLIKVHKKTSKILN 65


>SB_29260| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 804

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = +3

Query: 294 DLSAASERITCNPASAHMSKDKTKLNITNIISGFVLCYSFK 416
           ++S    ++  +  +A  S+D+  L ITNIIS F+L  SF+
Sbjct: 457 EVSKLERKLMKDVGTALHSRDEFSLLITNIISSFLLGKSFE 497


>SB_30471| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 316

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 152 VIILIAFSLLVTSRQYIGDPIDCIVDEIPLAVMDTYCWIYST 277
           V+I+   +LL+T  Q    P++     + +A++DT  ++  T
Sbjct: 4   VLIITLLALLITKLQVTASPVEIAHGRVHMAILDTQNFVCQT 45


>SB_41513| Best HMM Match : RVT_1 (HMM E-Value=8.9e-21)
          Length = 1080

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 474 KMLVLDLNCPIVEDECKSGRKKLLVD 551
           K+ VL+LNC  +  + KSG  K LVD
Sbjct: 220 KLKVLNLNCNSIRSQHKSGLFKALVD 245


>SB_14976| Best HMM Match : rve (HMM E-Value=1.3e-38)
          Length = 1172

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 474 KMLVLDLNCPIVEDECKSGRKKLLVD 551
           K+ VL+LNC  +  + KSG  K LVD
Sbjct: 219 KLKVLNLNCNSIRSQHKSGLFKALVD 244


>SB_56123| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 867

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/34 (44%), Positives = 18/34 (52%)
 Frame = -2

Query: 470 AASFPRFPTSSGEHKTGLLERITQNKPTDNICDI 369
           +AS P  PTS     TGL   IT+ KPT   C +
Sbjct: 15  SASIPNLPTSLWRRLTGL--GITRRKPTRRGCHV 46


>SB_51974| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3474

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 21/83 (25%), Positives = 37/83 (44%), Gaps = 5/83 (6%)
 Frame = +3

Query: 321 TCNPASAHMSKDKTKLNITNIISGFVLCYSFKQSCFMFP----ATCGKTWEGGRIKMLVL 488
           TC P    M +D++ ++I    +GF  C    Q+C   P     TCG  ++    K   L
Sbjct: 610 TCFPGFYLMMEDQSCVDIDECAAGFHQC---NQNCQNIPGSYNCTCGLGYQLAYDKKNCL 666

Query: 489 DLN-CPIVEDECKSGRKKLLVDY 554
           D++ C   + +C      ++ +Y
Sbjct: 667 DIDECATGKHQCAQNCTNIIGNY 689


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,909,660
Number of Sequences: 59808
Number of extensions: 459516
Number of successful extensions: 1347
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1346
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)