Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0779
         (633 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AK024718-1|BAB14973.1|  196|Homo sapiens protein ( Homo sapiens ...    30   5.9  
AJ310567-1|CAC83946.1| 1544|Homo sapiens phosphoinositide-bindin...    30   5.9  
BC005943-1|AAH05943.1|  221|Homo sapiens recombination activatin...    30   7.8  
AL691442-9|CAI15324.1|  166|Homo sapiens recombination activatin...    30   7.8  
AL691442-8|CAI15323.1|  221|Homo sapiens recombination activatin...    30   7.8  
AL691442-6|CAI15321.1|  156|Homo sapiens recombination activatin...    30   7.8  
AF126024-1|AAF17233.1|  179|Homo sapiens stromal cell protein is...    30   7.8  
AF126023-1|AAF17232.1|  221|Homo sapiens stromal cell protein pr...    30   7.8  

>AK024718-1|BAB14973.1|  196|Homo sapiens protein ( Homo sapiens
           cDNA: FLJ21065 fis, clone CAS01339. ).
          Length = 196

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 550 STSSFLRPDLHSSSTMGQLRSRTNILMRPPSHVFPQVAGNIKQDCLKE 407
           S  S  +P L  SST+GQ          PPS   PQ  G++++  L+E
Sbjct: 93  SQKSLDQPFLSKSSTLGQEERPPEPPPGPPSKSSPQARGSLEEQLLQE 140


>AJ310567-1|CAC83946.1| 1544|Homo sapiens phosphoinositide-binding
            proteins protein.
          Length = 1544

 Score = 30.3 bits (65), Expect = 5.9
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = -3

Query: 550  STSSFLRPDLHSSSTMGQLRSRTNILMRPPSHVFPQVAGNIKQDCLKE 407
            S  S  +P L  SST+GQ          PPS   PQ  G++++  L+E
Sbjct: 1441 SQKSLDQPFLSKSSTLGQEERPPEPPPGPPSKSSPQARGSLEEQLLQE 1488


>BC005943-1|AAH05943.1|  221|Homo sapiens recombination activating
           gene 1 activating protein 1 protein.
          Length = 221

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 SQILSVGLFCVILSSNPVLCSPLL-VGKRGKEAASRCWSWILTVPSLKTSAS 525
           +++  +GLFC + + +  L SPL  + K  +  +++C S+ LT+ +L TSAS
Sbjct: 124 ARLQQLGLFCSVFTISMYL-SPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 174


>AL691442-9|CAI15324.1|  166|Homo sapiens recombination activating
           gene 1 activating protein 1 protein.
          Length = 166

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 SQILSVGLFCVILSSNPVLCSPLL-VGKRGKEAASRCWSWILTVPSLKTSAS 525
           +++  +GLFC + + +  L SPL  + K  +  +++C S+ LT+ +L TSAS
Sbjct: 69  ARLQQLGLFCSVFTISMYL-SPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 119


>AL691442-8|CAI15323.1|  221|Homo sapiens recombination activating
           gene 1 activating protein 1 protein.
          Length = 221

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 SQILSVGLFCVILSSNPVLCSPLL-VGKRGKEAASRCWSWILTVPSLKTSAS 525
           +++  +GLFC + + +  L SPL  + K  +  +++C S+ LT+ +L TSAS
Sbjct: 124 ARLQQLGLFCSVFTISMYL-SPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 174


>AL691442-6|CAI15321.1|  156|Homo sapiens recombination activating
           gene 1 activating protein 1 protein.
          Length = 156

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 SQILSVGLFCVILSSNPVLCSPLL-VGKRGKEAASRCWSWILTVPSLKTSAS 525
           +++  +GLFC + + +  L SPL  + K  +  +++C S+ LT+ +L TSAS
Sbjct: 59  ARLQQLGLFCSVFTISMYL-SPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 109


>AF126024-1|AAF17233.1|  179|Homo sapiens stromal cell protein
           isoform protein.
          Length = 179

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 SQILSVGLFCVILSSNPVLCSPLL-VGKRGKEAASRCWSWILTVPSLKTSAS 525
           +++  +GLFC + + +  L SPL  + K  +  +++C S+ LT+ +L TSAS
Sbjct: 82  ARLQQLGLFCSVFTISMYL-SPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 132


>AF126023-1|AAF17232.1|  221|Homo sapiens stromal cell protein
           protein.
          Length = 221

 Score = 29.9 bits (64), Expect = 7.8
 Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
 Frame = +1

Query: 373 SQILSVGLFCVILSSNPVLCSPLL-VGKRGKEAASRCWSWILTVPSLKTSAS 525
           +++  +GLFC + + +  L SPL  + K  +  +++C S+ LT+ +L TSAS
Sbjct: 124 ARLQQLGLFCSVFTISMYL-SPLADLAKVIQTKSTQCLSYPLTIATLLTSAS 174


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,137,866
Number of Sequences: 237096
Number of extensions: 2159516
Number of successful extensions: 9070
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8886
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9070
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6916500330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)