Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0757
(678 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043... 31 0.85
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994... 30 2.0
07_03_1026 - 23369298-23370326 29 4.5
08_01_0203 + 1639993-1641141 28 6.0
02_05_1052 + 33770355-33773981,33774217-33774336,33774880-337749... 28 6.0
01_06_1535 + 38057802-38057999,38058338-38058437,38058730-380588... 28 6.0
08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579 28 7.9
07_03_0132 - 14011468-14012124 28 7.9
04_04_0369 - 24745140-24745510,24746005-24746089,24746746-247468... 28 7.9
>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
21204453-21205031,21205176-21205484,21205638-21205718,
21205971-21206279,21207430-21207816,21207964-21208767,
21208856-21209218,21209437-21209667,21209934-21210278,
21210494-21210712,21210759-21210815,21210978-21211322,
21211538-21211756,21211803-21211859,21212022-21212366,
21212584-21212814,21213100-21213458
Length = 4322
Score = 31.1 bits (67), Expect = 0.85
Identities = 21/52 (40%), Positives = 27/52 (51%)
Frame = +2
Query: 221 LDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSA 376
L KGSPRS + P P E +E+Q+ DG L++ VVQ PS A
Sbjct: 3519 LQDKGSPRSTQ--PPPPIESSEKESQIAE---DGQTVLLQSSVVQESTPSLA 3565
>08_02_1057 +
23995782-23996446,23998026-23998167,23998242-23999486,
23999521-23999529
Length = 686
Score = 29.9 bits (64), Expect = 2.0
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -1
Query: 111 TTPRTLPRMFGSESCSAAGIAHATPITIKTTRH 13
T PRT+P+ E C +G A AT + RH
Sbjct: 498 TVPRTVPQPNDHEDCRVSGFAEATNFNDQAGRH 530
>07_03_1026 - 23369298-23370326
Length = 342
Score = 28.7 bits (61), Expect = 4.5
Identities = 13/26 (50%), Positives = 15/26 (57%)
Frame = -2
Query: 86 CSGQSLVRQQASPTPRRSPLKRPDTS 9
C+ S R Q SPTP +P RPD S
Sbjct: 263 CATTSSPRVQPSPTPSPAPAARPDPS 288
>08_01_0203 + 1639993-1641141
Length = 382
Score = 28.3 bits (60), Expect = 6.0
Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)
Frame = +2
Query: 8 MKCLVVLMVIGVAWAMPAAEQDSDP-NILGSVLGVVKECVDGDVTLCLK 151
++C+V +++ V A A E D P NILG + G++ + DVTL ++
Sbjct: 151 IECVVNVVLDPVVTAGDAPELDHPPSNILGHLAGLLGDKGTADVTLVVR 199
>02_05_1052 +
33770355-33773981,33774217-33774336,33774880-33774996,
33775322-33775411,33775971-33776078,33776304-33776351
Length = 1369
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 553 GRRYHCSEEAAGQQAHRDQLRSGRPSSP 636
GR + EAAG QA R Q RP++P
Sbjct: 59 GRSSAAAAEAAGSQARRSQSTERRPATP 86
>01_06_1535 +
38057802-38057999,38058338-38058437,38058730-38058890,
38059166-38059363,38059442-38059534,38059732-38059854,
38060637-38060884,38061004-38061175,38061407-38061493,
38061523-38061786,38062415-38062577,38062839-38062926,
38063010-38063079,38063566-38063694,38063773-38063811,
38065539-38065760,38065935-38065999,38066095-38066288,
38066539-38066805,38066908-38066995,38067091-38067216,
38067291-38067400,38067523-38067671
Length = 1117
Score = 28.3 bits (60), Expect = 6.0
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 281 KAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLD 403
K RE+ ++ RL+ V DF E Y Q K +++ +D
Sbjct: 121 KGRESAMQERLLKEVGDFQERYCDQIKKIGELETQLKKEID 161
>08_02_1309 - 26029691-26030609,26030850-26030925,26032198-26032579
Length = 458
Score = 27.9 bits (59), Expect = 7.9
Identities = 14/30 (46%), Positives = 16/30 (53%)
Frame = +1
Query: 553 GRRYHCSEEAAGQQAHRDQLRSGRPSSPRG 642
GRR E G+ A D R+GRP S RG
Sbjct: 411 GRRAREEREKVGKGAEGDSHRAGRPMSLRG 440
>07_03_0132 - 14011468-14012124
Length = 218
Score = 27.9 bits (59), Expect = 7.9
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +3
Query: 222 WTAKA-HPGLPGPWSHCPRSPRPGKHRSSLG 311
W A + G+PG W H PR G S+G
Sbjct: 176 WKAAGENAGVPGDWGHDPRGKLGGIEEESMG 206
>04_04_0369 -
24745140-24745510,24746005-24746089,24746746-24746878,
24747764-24748584
Length = 469
Score = 27.9 bits (59), Expect = 7.9
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 4/81 (4%)
Frame = +2
Query: 149 KEKALRYVETLRSKREITLVDGVTLDSKGS--PRSARALEPLPEEPKAREAQVES--RLV 316
KE+ +RY+ L K + + TL ++ S R L + K R +E RL
Sbjct: 286 KERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSENSDLKIRVQTMEQQVRLQ 345
Query: 317 DGVADFLENYVVQFKLPSSAV 379
D + D L + + Q K+ + V
Sbjct: 346 DALNDRLRDEIQQLKVATGQV 366
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,290,118
Number of Sequences: 37544
Number of extensions: 343158
Number of successful extensions: 1354
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1352
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1726796312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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