Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0757
         (678 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical pr...    30   1.7  
AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical ...    30   1.7  
AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical...    29   4.0  
AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like pro...    29   4.0  
U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain (p...    28   5.3  
U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical pr...    28   7.0  

>U97002-4|AAB52267.1|  630|Caenorhabditis elegans Hypothetical
           protein K09H11.4 protein.
          Length = 630

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 19/71 (26%), Positives = 29/71 (40%)
 Frame = +1

Query: 454 HRQTKDHGPHPPILGYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRDQLRSGRPSS 633
           H++++D  P     G    R R  +   +D    RR H SEE  G    +       P  
Sbjct: 318 HKESRDRRPARGDSGEVEKRGRGEKAEGRD-EQERRSHGSEERRGGSEEQPHREERGPQK 376

Query: 634 PRGALRKQRPP 666
           P G  ++Q+ P
Sbjct: 377 PEGQQQQQQAP 387


>AC024809-3|AAF59541.3|  455|Caenorhabditis elegans Hypothetical
           protein Y53G8AR.8 protein.
          Length = 455

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 18/55 (32%), Positives = 26/55 (47%)
 Frame = +2

Query: 179 LRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLEN 343
           L  + E+ L D V  D K  PR  R    LPE  ++R    +++ +    DF EN
Sbjct: 393 LEHEAELNLTDNVITDPKMLPRGKRPEFELPEH-RSRLEDAKAQFLKEFGDFEEN 446


>AL110477-13|CAB54337.2|  789|Caenorhabditis elegans Hypothetical
           protein Y113G7B.23 protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +1

Query: 439 PPSLGHR----QTKDHGPHPPILGYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRD 606
           PP   +R    Q + + P+PP     + +++Q++       PG          GQQ +  
Sbjct: 633 PPQQAYRYPPQQGQQYSPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYGG 692

Query: 607 QLRSGRPSSPRGAL--RKQRPPLGA 675
               G+P  P G    ++QRPP  A
Sbjct: 693 PPPPGQPYGPPGGYPPQQQRPPYQA 717


>AF230279-1|AAG16654.1|  789|Caenorhabditis elegans SWI3-like
           protein protein.
          Length = 789

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 6/85 (7%)
 Frame = +1

Query: 439 PPSLGHR----QTKDHGPHPPILGYHRLRSRQSRRTCQDLTPGRRYHCSEEAAGQQAHRD 606
           PP   +R    Q + + P+PP     + +++Q++       PG          GQQ +  
Sbjct: 633 PPQQAYRYPPQQGQQYSPYPPPQQQQQHQAQQAQSQAHYGPPGGGQGPPPPPQGQQYYGG 692

Query: 607 QLRSGRPSSPRGAL--RKQRPPLGA 675
               G+P  P G    ++QRPP  A
Sbjct: 693 PPPPGQPYGPPGGYPPQQQRPPYQA 717


>U40415-10|AAK39254.1|  215|Caenorhabditis elegans Dnaj domain
           (prokaryotic heat shockprotein) protein 14 protein.
          Length = 215

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 3/41 (7%)
 Frame = +2

Query: 56  PAAEQDSDPNI---LGSVLGVVKECVDGDVTLCLKEKALRY 169
           PAA+   DP     L +VLG+ K   D ++    ++ ALRY
Sbjct: 25  PAADHSHDPKKGLHLYNVLGIQKNATDDEIKKAYRKLALRY 65


>U40414-2|AAA81405.2|  634|Caenorhabditis elegans Hypothetical
           protein F53B3.2 protein.
          Length = 634

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -1

Query: 222 KVTPSTSVISLLDLKVSTYLKAFSLRHR-----VTSPSTHSLTTPRTLPRMF 82
           K+T +T++  L +L  ST L     R R     V  P T S  TPR +P +F
Sbjct: 79  KLTIATNLRELFNLTTSTPLPKTPKRFRPKIIPVDKPETTSKPTPRPMPTVF 130


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,292,125
Number of Sequences: 27780
Number of extensions: 246573
Number of successful extensions: 1009
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 918
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1539654388
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)