Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0757
         (678 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g13570.1 68418.m01568 MutT/nudix family protein similar to mR...    31   0.93 
At5g49730.1 68418.m06158 ferric reductase-like transmembrane com...    29   2.8  
At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial a...    29   3.7  
At4g09400.1 68417.m01549 hypothetical protein similar to At3g453...    29   3.7  
At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /...    28   4.9  
At3g24660.1 68416.m03096 leucine-rich repeat transmembrane prote...    27   8.6  
At3g06620.1 68416.m00769 protein kinase family protein contains ...    27   8.6  
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains...    27   8.6  
At1g67230.1 68414.m07652 expressed protein                             27   8.6  

>At5g13570.1 68418.m01568 MutT/nudix family protein similar to
           mRNA-decapping enzyme [Homo sapiens] GI:23268269;
           contains Pfam profile PF00293: NUDIX domain
          Length = 373

 Score = 30.7 bits (66), Expect = 0.93
 Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 2/88 (2%)
 Frame = +2

Query: 11  KCLVVLMVIGVAWAMPAAEQDSDPNILGSVLGVVKECVDGDVTLCLKEKALRYVE-TLRS 187
           +CL+V    G +W+ P  ++  D       +  V E    DV+  LK +   Y+E   R 
Sbjct: 122 RCLLVKGWKGSSWSFPRGKKSKDEEDHACAIREVLEETGFDVSKLLKRE--EYIEFVFRQ 179

Query: 188 KR-EITLVDGVTLDSKGSPRSARALEPL 268
           +R  + +V GVT D+  +P + + +  +
Sbjct: 180 QRVRLYIVAGVTEDTVFAPLTKKEISEI 207


>At5g49730.1 68418.m06158 ferric reductase-like transmembrane
           component family protein similar to ferric-chelate
           reductase (FRO1) [Pisum sativum] GI:15341529; contains
           Pfam profile PF01794: Ferric reductase like
           transmembrane componenent
          Length = 738

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -1

Query: 504 MIPKNRGMRAM-IFSLAMAKRGRSCLIFFFLPRASSSDLL 388
           ++PKNR +  + +  L +   G  C++F FLP +  S LL
Sbjct: 161 VLPKNRSILLLEVTGLRLGMIGLLCMVFLFLPISRGSILL 200


>At5g26860.1 68418.m03204 Lon protease homolog 2, mitochondrial
           almost identical to Lon protease homolog 2
           mitochondrial precursor SP:P93655, GI:1848290 from
           [Arabidopsis thaliana]
          Length = 940

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 266 LPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSAVE 382
           +PEEP       E+ +V  V + +EN+ V+    SSA E
Sbjct: 674 VPEEPAVASDPEEAEIVADVGESIENHTVEENTVSSAEE 712


>At4g09400.1 68417.m01549 hypothetical protein similar to At3g45350,
           At2g14330
          Length = 513

 Score = 28.7 bits (61), Expect = 3.7
 Identities = 20/62 (32%), Positives = 31/62 (50%)
 Frame = -1

Query: 489 RGMRAMIFSLAMAKRGRSCLIFFFLPRASSSDLLMPSTAEDGSLNCTT*FSKKSATPSTS 310
           R +R  I S+  A+ GR   +F+F     SS +++    ED  +  T  F +K+  PST 
Sbjct: 285 RSIRTAI-SILRARGGRD--LFWFYTGKRSSGIVLTLGCEDRHICSTRTFHRKTTAPSTP 341

Query: 309 LD 304
            D
Sbjct: 342 DD 343


>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24280) [Saccharomyces
           cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
           come from this gene
          Length = 540

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/72 (26%), Positives = 34/72 (47%)
 Frame = +2

Query: 125 DGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEEPKAREAQVE 304
           + D    LKE   + +  L+SK E  +VD   L +K   + +  ++   EE    EA+VE
Sbjct: 57  ESDFFADLKESEKKALSDLKSKLEEAIVDNTLLKTK--KKESSPMKEKKEEVVKPEAEVE 114

Query: 305 SRLVDGVADFLE 340
            +  +   + +E
Sbjct: 115 KKKEEAAEEKVE 126


>At3g24660.1 68416.m03096 leucine-rich repeat transmembrane protein
           kinase, putative identical to putative kinase-like
           protein TMKL1 precursor GB:P33543 from [Arabidopsis
           thaliana], (Plant Mol. Biol. 23 (2), 415-421 (1993))
          Length = 674

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = -1

Query: 450 KRGRSCLIFFFLPRASSSDLLMPSTAEDGSLN 355
           KRG   LI+ +LP  S  DLL  S     +LN
Sbjct: 439 KRGEKLLIYDYLPNISLHDLLHESKPRKPALN 470


>At3g06620.1 68416.m00769 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 773

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = -1

Query: 504 MIPKNRGMRAMIFSLAMAKRGRSCLIFFFLPRASSSDLLMPSTAE 370
           ++ + R    ++F  A+    R C++  FLPR S   LL  ST++
Sbjct: 542 LMKRLRHPNVLLFMGAVTSPQRLCIVSEFLPRGSLFRLLQKSTSK 586


>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
            ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
          Length = 1340

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = +2

Query: 113  KECVDGDVTLCLKEKALRYVETLRSKREITLVDGVTLDSKGSPRSARALEPLPEE 277
            KE VDG   +  KE   +  ETL SK E+T+ + V ++ +         +  PEE
Sbjct: 1115 KETVDGSREIADKEAVAKTKETLGSK-EVTVGEAVNMEVENQDEEDDDGDDDPEE 1168


>At1g67230.1 68414.m07652 expressed protein
          Length = 1132

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 19/60 (31%), Positives = 32/60 (53%)
 Frame = +2

Query: 230 KGSPRSARALEPLPEEPKAREAQVESRLVDGVADFLENYVVQFKLPSSAVEGMRRSLDEA 409
           K     AR L+ L E+ +ARE     +LVD     L++   +F+L    +E  R+S+D++
Sbjct: 314 KSIETKARELQALQEKLEAREKMAVQQLVDEHQAKLDSTQREFEL---EMEQKRKSIDDS 370


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,905,647
Number of Sequences: 28952
Number of extensions: 237828
Number of successful extensions: 812
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 779
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)