Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0734
         (669 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia nu...    40   0.041
UniRef50_UPI0000F1DA1C Cluster: PREDICTED: similar to zinc finge...    35   1.5  
UniRef50_A2F5F7 Cluster: Surface antigen BspA-like; n=1; Trichom...    35   2.0  
UniRef50_A4R0J4 Cluster: Putative uncharacterized protein; n=1; ...    34   2.7  

>UniRef50_A4KWG0 Cluster: Reverse transcriptase; n=3; Ostrinia
           nubilalis|Rep: Reverse transcriptase - Ostrinia
           nubilalis (European corn borer)
          Length = 497

 Score = 40.3 bits (90), Expect = 0.041
 Identities = 15/23 (65%), Positives = 20/23 (86%)
 Frame = +3

Query: 594 QRTTATEIAQRISKLKWQWADHI 662
           +RT  T+IA+RI+K+KWQWA HI
Sbjct: 407 RRTRVTDIARRIAKIKWQWAGHI 429


>UniRef50_UPI0000F1DA1C Cluster: PREDICTED: similar to zinc finger
           protein 41,; n=5; Danio rerio|Rep: PREDICTED: similar to
           zinc finger protein 41, - Danio rerio
          Length = 785

 Score = 35.1 bits (77), Expect = 1.5
 Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 4/56 (7%)
 Frame = +1

Query: 52  CQQIFVIFHYVQ*K-KVHL-KRPWPNLVVGIEVIWQVQFLAHERHHEGLTS--CSK 207
           C + FV+  Y++   K+H  ++P+   V G   +WQ+ F AH++ HEG+ +  CS+
Sbjct: 283 CNKKFVLESYLKRHLKIHQNEKPYVCSVCGKGFLWQLSFKAHQKIHEGMKTHVCSE 338


>UniRef50_A2F5F7 Cluster: Surface antigen BspA-like; n=1;
           Trichomonas vaginalis G3|Rep: Surface antigen BspA-like
           - Trichomonas vaginalis G3
          Length = 569

 Score = 34.7 bits (76), Expect = 2.0
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = -2

Query: 647 LPLQLAD-SLSYFGGCSSLHVIYAISK*NYL*NY**VNSFFRDVRIVVCTCMKGIKNFFT 471
           LP+ L     S F GC+SL ++    K + + N    N    +V + +CT +  I  +  
Sbjct: 296 LPISLTTIGFSTFSGCTSLTLVLFHDKISSIGNNCFENCNLEEVDLSICTSLTSISEY-- 353

Query: 470 CVTGNTH 450
           C +GNTH
Sbjct: 354 CFSGNTH 360


>UniRef50_A4R0J4 Cluster: Putative uncharacterized protein; n=1;
           Magnaporthe grisea|Rep: Putative uncharacterized protein
           - Magnaporthe grisea (Rice blast fungus) (Pyricularia
           grisea)
          Length = 941

 Score = 34.3 bits (75), Expect = 2.7
 Identities = 22/53 (41%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = +1

Query: 19  LLTPVTSVGSTCQQIFVIFHYVQ*--KKVHLKRPWPNLVV---GIEVIWQVQF 162
           +L     +G TCQ I  I H V+    KV   RPWPNL+V        WQV+F
Sbjct: 404 ILADDMGLGKTCQIISFIAHIVESYNPKVDEVRPWPNLIVVPPSTLDNWQVEF 456


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 657,603,824
Number of Sequences: 1657284
Number of extensions: 12815897
Number of successful extensions: 21407
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21404
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 51239674196
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)