Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0734
         (669 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF117200-1|ABL67437.1|  421|Anopheles gambiae serpin 1 protein.        23   6.6  
AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    23   6.6  
AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.            23   8.7  
AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.            23   8.7  
AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein pr...    23   8.7  

>EF117200-1|ABL67437.1|  421|Anopheles gambiae serpin 1 protein.
          Length = 421

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +2

Query: 128 WSELKSSGRYNFLLTNDTMKD 190
           W E  + GR   L+T DT++D
Sbjct: 169 WCEKVTRGRITELVTEDTLQD 189


>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 23.4 bits (48), Expect = 6.6
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 182 WCRS*ARNCTCQMTSIPTTKLGHGRFK*TFFHCT*WKITKIC 57
           WC    R  T Q+      KLGH  F+     CT    +K+C
Sbjct: 316 WCVCSLREATVQVKCFKCWKLGHKGFE-----CTGQDRSKLC 352


>AY753540-1|AAV28543.1| 3320|Anopheles gambiae SGS3 protein.
          Length = 3320

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 19  LLTPVTSVGSTCQQIFVIFHYVQ*K-KVHLKR 111
           LLT  T    + QQ  V+ HYVQ + KVHLKR
Sbjct: 630 LLTGYTIRTLSYQQSAVL-HYVQQEDKVHLKR 660


>AY753539-1|AAV28542.1| 3318|Anopheles gambiae SGS2 protein.
          Length = 3318

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 17/32 (53%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 19  LLTPVTSVGSTCQQIFVIFHYVQ*K-KVHLKR 111
           LLT  T    + QQ  V+ HYVQ + KVHLKR
Sbjct: 631 LLTGYTIRTLSYQQSAVL-HYVQQEDKVHLKR 661


>AF387862-1|AAL56547.1|  476|Anopheles gambiae gag polyprotein
           protein.
          Length = 476

 Score = 23.0 bits (47), Expect = 8.7
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 311 MLLLRNNLYVFESCA 355
           MLL+R NL+ FES A
Sbjct: 25  MLLVRENLWKFESTA 39


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 688,278
Number of Sequences: 2352
Number of extensions: 13749
Number of successful extensions: 30
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 66904800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)