Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0734
         (669 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15100.1 68417.m02321 serine carboxypeptidase S10 family prot...    30   1.6  
At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 ...    29   2.8  
At2g03530.1 68415.m00313 F-box family protein-related similar to...    27   8.5  

>At4g15100.1 68417.m02321 serine carboxypeptidase S10 family protein
           similar to Serine carboxypeptidase II chains A and B
           (SP:P08819) (EC 3.4.16.6) [Triticum aestivum (Wheat)]
          Length = 407

 Score = 29.9 bits (64), Expect = 1.6
 Identities = 16/55 (29%), Positives = 27/55 (49%)
 Frame = +3

Query: 390 KVDERAYLILSCYS*TSSVFMSVTRYTGKKIFNTFHTSANYDPYVTEKRIHLLIV 554
           KV  R +L+ SC    SSV    T+  G  + +T      ++PY   K +++L +
Sbjct: 3   KVVLRIFLLFSCLIGCSSVGYGATQEIGPFLADTNEKGLIFNPYAWNKEVNMLFL 57


>At2g03590.1 68415.m00319 expressed protein similar to SP|Q41706 A3
           protein (unknown function) {Vigna unguiculata}
          Length = 390

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 15/45 (33%), Positives = 26/45 (57%)
 Frame = +3

Query: 21  SHSSHVSRLYVSADFCYFPLRAMKKGSFETSMA*FSGRN*SHLAG 155
           S S+ V  L ++  F Y+P+  + + SF+  +  ++GR  S LAG
Sbjct: 270 SISAFVVALILNIRFLYWPILGLPRSSFKAYLNDWNGRGWSFLAG 314


>At2g03530.1 68415.m00313 F-box family protein-related similar to A3
           protein (Swiss-Prot:Q41706)(unknown function) [Vigna
           unguiculata]; contains 9 transmembrane domains;
           supported by tandem duplication of F-box family protein
           (GI:3805763) (TIGR_Ath1:At2g07140) [Arabidopsis
           thaliana]
          Length = 385

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +3

Query: 21  SHSSHVSRLYVSADFCYFPLRAMKKGSFETSMA*FSGRN*SHLAG 155
           S S  +  L ++  F Y+P+  + K SF+  +  ++GR  + LAG
Sbjct: 265 SVSCFIIALILNVVFLYYPVLGLPKSSFKAYLNDWNGRYWAFLAG 309


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,355,131
Number of Sequences: 28952
Number of extensions: 290115
Number of successful extensions: 512
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 498
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 512
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1412971776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)