Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0723
         (372 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc fin...    21   4.1  
AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface pro...    21   5.4  
AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory recept...    20   7.1  
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    20   7.1  
EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic acetyl...    20   9.4  
EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic acetyl...    20   9.4  
EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic acetyl...    20   9.4  
EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic acetyl...    20   9.4  
EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic acetyl...    20   9.4  

>AY316682-1|AAQ83696.1|  456|Tribolium castaneum Sp-like zinc finger
           protein protein.
          Length = 456

 Score = 21.0 bits (42), Expect = 4.1
 Identities = 7/21 (33%), Positives = 12/21 (57%)
 Frame = -2

Query: 242 VEDHCIDSVAFWTALRSGSWL 180
           ++   + S A+W    +GSWL
Sbjct: 179 IKSDSVTSNAWWDVHSTGSWL 199


>AF322227-1|AAK01654.1|  782|Tribolium castaneum cell surface
           protein chaoptin protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 6/17 (35%), Positives = 13/17 (76%)
 Frame = -2

Query: 86  NVPSMRVLNIARKRIYE 36
           N+P ++VL+++   +YE
Sbjct: 270 NMPHLQVLDLSHNSLYE 286


>AM292323-1|CAL23135.2|  587|Tribolium castaneum gustatory receptor
           candidate 2 protein.
          Length = 587

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 120 ILKQVRHDYVLKCSLDASVE 61
           I K++R DY  +C L   V+
Sbjct: 263 IWKKLREDYTRQCRLVRKVD 282


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
           protein.
          Length = 297

 Score = 20.2 bits (40), Expect = 7.1
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +2

Query: 50  FAQYSTLASREHFKT*SCLTCFKMADTAHTKIEDNPKILSGP 175
           + +Y TL   + F     LT  +  + AH     N  ++S P
Sbjct: 227 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLTNKNLVSKP 268


>EF127810-1|ABL67947.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           5 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++   C PEP + +
Sbjct: 180 IGMPGKKNTIVYACCPEPYVDV 201


>EF127809-1|ABL67946.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           4 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++   C PEP + +
Sbjct: 180 IGMPGKKNTIVYACCPEPYVDV 201


>EF127808-1|ABL67945.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           3 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++   C PEP + +
Sbjct: 180 IGMPGKKNTIVYACCPEPYVDV 201


>EF127807-1|ABL67944.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           2 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++   C PEP + +
Sbjct: 180 IGMPGKKNTIVYACCPEPYVDV 201


>EF127806-1|ABL67943.1|  311|Tribolium castaneum nicotinic
           acetylcholine receptor subunitalpha 6 transcript variant
           1 protein.
          Length = 311

 Score = 19.8 bits (39), Expect = 9.4
 Identities = 7/22 (31%), Positives = 12/22 (54%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++   C PEP + +
Sbjct: 180 IGMPGKKNTIVYACCPEPYVDV 201


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,388
Number of Sequences: 336
Number of extensions: 1897
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7722305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)