Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0723
(372 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom... 52 3e-08
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar... 29 0.23
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha... 27 0.94
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom... 27 1.2
SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces p... 25 3.8
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ... 25 3.8
SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116 |S... 25 5.0
SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 5.0
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 24 6.7
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ... 24 6.7
SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces pom... 24 6.7
SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyc... 24 6.7
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 24 8.8
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo... 24 8.8
>SPAC23H4.06 |gln1||glutamate-ammonia ligase
Gln1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 359
Score = 52.0 bits (119), Expect = 3e-08
Identities = 28/58 (48%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Frame = +2
Query: 200 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
+LSK +L++Y DLP K++A YIWIDG HLR K TL+ P + L +WNFD
Sbjct: 9 LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFD 64
>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 524
Score = 29.1 bits (62), Expect = 0.23
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -3
Query: 322 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 218
Q IF AR +VGG + SR WKI+ +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326
>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 697
Score = 27.1 bits (57), Expect = 0.94
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = +2
Query: 134 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 250
H KIE+N + +S P ++ S L L + + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154
>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 447
Score = 26.6 bits (56), Expect = 1.2
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +2
Query: 143 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 322
++DN + S +S N+ LS + + +P+PA + T + D + R T
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351
Query: 323 NFIPKAPKD 349
+FI + K+
Sbjct: 352 SFIANSEKE 360
>SPCC23B6.01c |||oxysterol binding protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 3.8
Identities = 17/48 (35%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -1
Query: 261 RILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR-IFGLSSILVCAVSA 121
++ +G LY++S DS E VKTG R + +S V VSA
Sbjct: 256 KVKRVSTGEVLYKISGKWDSEMSVESVKTGETRPLLDVSKHDVYLVSA 303
>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1427
Score = 25.0 bits (52), Expect = 3.8
Identities = 13/31 (41%), Positives = 18/31 (58%)
Frame = -2
Query: 221 SVAFWTALRSGSWLKPAPIESSDYLLFWYAL 129
S+ FW AL SG+ L + SS L+ YA+
Sbjct: 878 SIHFWIALWSGNSLFSLKLPSSFSFLWGYAI 908
>SPBC691.04 |||mitochondrial ATP-dependent RNA helicase Mss116
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 24.6 bits (51), Expect = 5.0
Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Frame = -3
Query: 355 RQIFGSFRYEIQGAIFAPQVFARAVD-PNV 269
R I SFR G +FA V AR +D PN+
Sbjct: 333 RSITESFRKCQSGILFATDVVARGMDFPNI 362
>SPAC13G7.09c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 135
Score = 24.6 bits (51), Expect = 5.0
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 9 ETFYAPTKPFVNTFSRNIQHSHRG 80
+T P K F+N RN+Q +RG
Sbjct: 39 KTKLRPNKVFLNNMVRNVQSHNRG 62
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 24.2 bits (50), Expect = 6.7
Identities = 19/65 (29%), Positives = 29/65 (44%)
Frame = +2
Query: 14 ILRSDKTFRKYVFAQYSTLASREHFKT*SCLTCFKMADTAHTKIEDNPKILSGPVLTNSP 193
+LR+ K F Q S+ + F+ L+ F DTA + D P S V+T+S
Sbjct: 778 MLRNGKIIESGSFTQLSSSPDSQLFQL---LSEFSKKDTASSTGADTPLSRSQSVITSST 834
Query: 194 NAVLS 208
+ S
Sbjct: 835 DVTSS 839
>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2111
Score = 24.2 bits (50), Expect = 6.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 3/51 (5%)
Frame = +2
Query: 116 KMADTAHTKIEDN-PKILSGPVLTNSPN--AVLSKTLLSRYNDLPLPADKI 259
K+ D A +E+ P ++ ++ A LS + RY + LP D I
Sbjct: 1306 KLIDEAEVTLEEGIPSVVECEIINTDRTLGATLSNKISKRYGEEGLPTDSI 1356
>SPAC17A5.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 247
Score = 24.2 bits (50), Expect = 6.7
Identities = 12/25 (48%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = -1
Query: 360 HIGRSLGALGMKFKVR-SLHLRCSP 289
H+GR LG G FKVR + +R P
Sbjct: 87 HLGRELGIHGGAFKVRKEISIRSIP 111
>SPCC1020.12c ||SPCC14G10.06|xap-5-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 288
Score = 24.2 bits (50), Expect = 6.7
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +1
Query: 88 QDIIVPYLFQNG*YSAYQNRR*SEDSIG 171
++I++P+++ +G + Y R +DS+G
Sbjct: 137 KEILIPFIYYDGTSTTYHVRTRLKDSVG 164
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 23.8 bits (49), Expect = 8.8
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +2
Query: 158 KILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGE 295
+ILS V V KTLL + D P+ A + GSG+
Sbjct: 512 EILSAQVSALREEIVSLKTLLIAHKDCPVAKSNSAAVATSVIGSGD 557
>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1811
Score = 23.8 bits (49), Expect = 8.8
Identities = 10/27 (37%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +3
Query: 27 TKPFVNTFSRNIQHSHRGNIS-RHNRA 104
TKP + +NI+ S G+IS +H+++
Sbjct: 1095 TKPLRKSLDKNIRQSRSGSISLKHSKS 1121
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,661,278
Number of Sequences: 5004
Number of extensions: 33311
Number of successful extensions: 89
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 87
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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