Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0723
(372 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 50 6e-07
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 48 2e-06
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 44 4e-05
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 25 0.53
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 1.2
01_01_0307 + 2513678-2513772,2514064-2514682 29 1.2
06_01_0370 - 2660569-2661591,2661685-2662260 28 2.7
05_01_0015 + 117238-117996 27 3.6
04_01_0505 + 6599181-6599249,6599537-6599632,6599931-6599962,660... 27 3.6
10_08_0813 + 20774622-20774931,20775461-20775828,20776547-207767... 27 6.2
10_08_0249 + 16172811-16172987,16174048-16174299,16174426-161745... 27 6.2
01_07_0292 + 42560302-42560668,42560818-42560910,42563746-425639... 27 6.2
01_06_0371 + 28819035-28819322,28820541-28820595,28821179-288213... 27 6.2
11_06_0464 + 23894893-23895077,23895148-23895706 26 8.2
08_02_1345 - 26286448-26286679,26287483-26288038,26288068-262883... 26 8.2
08_02_0981 + 23266174-23266689,23268389-23268549,23269068-232693... 26 8.2
08_01_0879 - 8633063-8633080,8633221-8633399,8633581-8634238 26 8.2
07_03_0324 + 16803652-16803990,16804001-16804054,16804264-168042... 26 8.2
01_01_1010 - 7996921-7997673,7999212-7999399,7999688-7999784,800... 26 8.2
>04_04_1445 -
33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 50.0 bits (114), Expect = 6e-07
Identities = 25/65 (38%), Positives = 35/65 (53%)
Frame = +2
Query: 176 VLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 355
V T + V L + P DKI+A YIW+ G+G LR K RT++ + P +LP
Sbjct: 792 VSTETTGVVTRMEQLLNMDTTPF-TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELP 850
Query: 356 IWNFD 370
WN+D
Sbjct: 851 KWNYD 855
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 48.0 bits (109), Expect = 2e-06
Identities = 22/40 (55%), Positives = 26/40 (65%)
Frame = +2
Query: 251 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
+KI+A YIWI GSG LR K RTL+ P LP WN+D
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYD 56
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 44.0 bits (99), Expect = 4e-05
Identities = 20/41 (48%), Positives = 25/41 (60%)
Frame = +2
Query: 248 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
+DKI+A YIW+ GSG LR K RT+ LP WN+D
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYD 56
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 24.6 bits (51), Expect(2) = 0.53
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = +2
Query: 296 HLRCKDRTLNFIPKAPKDLPIWNFD 370
HL+ + TL+ P LP WNFD
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFD 83
Score = 24.2 bits (50), Expect(2) = 0.53
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 233 DLPLPADKILATYIWI 280
DL DK++A YIWI
Sbjct: 13 DLSESTDKVIAEYIWI 28
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 29.1 bits (62), Expect = 1.2
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -1
Query: 264 ARILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR 163
AR L +LY SS+LD + GEL++ PDR
Sbjct: 553 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYPDR 586
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 1.2
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -3
Query: 145 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 44
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
>06_01_0370 - 2660569-2661591,2661685-2662260
Length = 532
Score = 27.9 bits (59), Expect = 2.7
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -1
Query: 264 ARILSAGSGRSLYRLSSVLDS--TAFGELVKTGPDRIFGLSSILVCAVSAILKQVRHDYV 91
A + GS S+Y+ + D A LVKT PD G L+ + AIL ++RHD++
Sbjct: 219 ANEIGRGSSGSVYK-GRLRDGREVAIKSLVKTSPDH--GREESLMRGL-AILSRLRHDHI 274
Query: 90 LK 85
++
Sbjct: 275 VR 276
>05_01_0015 + 117238-117996
Length = 252
Score = 27.5 bits (58), Expect = 3.6
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -3
Query: 145 YFGMRCISHFETGKARLCLEMFPRCEC*ILRENVFTKGFV 26
YFG+ SH AR+ LE+ RC +L E+ G +
Sbjct: 146 YFGIGKQSHRSLDDARMNLEVLKRCATLLLLESTLPPGML 185
>04_01_0505 +
6599181-6599249,6599537-6599632,6599931-6599962,
6601191-6601428,6601852-6601905,6601923-6602130,
6602353-6602590,6602788-6602962,6603074-6603442
Length = 492
Score = 27.5 bits (58), Expect = 3.6
Identities = 15/50 (30%), Positives = 27/50 (54%)
Frame = +2
Query: 5 DRNILRSDKTFRKYVFAQYSTLASREHFKT*SCLTCFKMADTAHTKIEDN 154
D + R+ K+ R + +Y +LAS + + SC+ F ++D + EDN
Sbjct: 61 DNDTTRNFKSIRLWKCNKYQSLASASYVPSHSCVYIFFLSDNTGNE-EDN 109
>10_08_0813 +
20774622-20774931,20775461-20775828,20776547-20776783,
20777717-20777968
Length = 388
Score = 26.6 bits (56), Expect = 6.2
Identities = 16/41 (39%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +2
Query: 113 FKMADT-AHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYN 232
F MA A+ +ED+ ++ SGP+ T PN L TL+ Y+
Sbjct: 45 FSMAVVQANNLLEDHSQVESGPLSTTDPN--LQGTLVGVYD 83
>10_08_0249 +
16172811-16172987,16174048-16174299,16174426-16174505,
16174616-16174701,16174799-16174904,16174987-16175143,
16175220-16175315,16175797-16175845,16175946-16176205,
16176327-16176499,16176692-16176812,16176923-16176975,
16177088-16177217,16177371-16177516,16177887-16178075,
16178317-16178549,16178784-16178932,16179042-16179104
Length = 839
Score = 26.6 bits (56), Expect = 6.2
Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = +2
Query: 230 NDLPLPADKIL-ATYIWIDGSGEHLRCK 310
N +PL +L +WID SG+H RC+
Sbjct: 395 NGIPLSEQDVLFVRVVWIDTSGQH-RCR 421
>01_07_0292 +
42560302-42560668,42560818-42560910,42563746-42563969,
42564047-42564147,42564229-42564441,42564843-42565002
Length = 385
Score = 26.6 bits (56), Expect = 6.2
Identities = 14/51 (27%), Positives = 22/51 (43%)
Frame = -2
Query: 326 NSRCDLCTSGVRQSRRSKCRWRESCQPAVEDHCIDSVAFWTALRSGSWLKP 174
++RCD+C SG R C + C C+ +A + +G W P
Sbjct: 67 STRCDVCGSGERDEELLLC---DGCDRGRHTFCLRPIA--ARVPTGPWFCP 112
>01_06_0371 +
28819035-28819322,28820541-28820595,28821179-28821354,
28821481-28821702,28821796-28822034,28822107-28822632,
28822726-28822999,28823098-28823737,28823833-28824061,
28824299-28824565,28824700-28824963,28825045-28825689
Length = 1274
Score = 26.6 bits (56), Expect = 6.2
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 45 TFSRNIQHSHRGNISRHNRALP 110
+F R+I GN SRH+ ALP
Sbjct: 639 SFKRSISRDSAGNSSRHSLALP 660
>11_06_0464 + 23894893-23895077,23895148-23895706
Length = 247
Score = 26.2 bits (55), Expect = 8.2
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -1
Query: 333 GMKFKVRSLHLRCSPEPSIQM*VARILSAGSG 238
G++ +V L PEP + + R+LS G G
Sbjct: 139 GIELRVEPASLLAVPEPDLHRHLGRLLSTGDG 170
>08_02_1345 -
26286448-26286679,26287483-26288038,26288068-26288358,
26288953-26290516
Length = 880
Score = 26.2 bits (55), Expect = 8.2
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 7/64 (10%)
Frame = -1
Query: 252 SAGSGRSLYRLSSVL-------DSTAFGELVKTGPDRIFGLSSILVCAVSAILKQVRHDY 94
S S+YRL+ V+ DS F V+ P + SS CA +++V +
Sbjct: 805 SEDKDNSIYRLAGVIEHHGRGKDSGHFVAYVRPSPRQQTNGSSSWFCASDTDIREVSLEE 864
Query: 93 VLKC 82
VLKC
Sbjct: 865 VLKC 868
>08_02_0981 +
23266174-23266689,23268389-23268549,23269068-23269309,
23270180-23270284,23270746-23270902,23271860-23272028,
23272598-23272638,23273151-23273216,23273524-23273779
Length = 570
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +2
Query: 98 SCLTCFKMADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLS 223
SC C +A H K E PK ++ P +S + + LS
Sbjct: 416 SCRLCIHVATKIHEKEERTPKFMNRPCSCSSKRGKVRPSHLS 457
>08_01_0879 - 8633063-8633080,8633221-8633399,8633581-8634238
Length = 284
Score = 26.2 bits (55), Expect = 8.2
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +1
Query: 79 GTFQDIIVPYLFQNG*YSAYQNRR*SEDSIGAGFNQLPERSAVQNA 216
G +D V Y FQN + + R + + GA +QLP +A A
Sbjct: 81 GAVRDANVFYWFQNRRSRSRRRARQLQQACGAALHQLPSAAAAAGA 126
>07_03_0324 +
16803652-16803990,16804001-16804054,16804264-16804269,
16804657-16804731,16804864-16804983,16806571-16806762,
16806994-16807077,16807167-16807256,16807832-16807885,
16808006-16808085,16808523-16808633,16808707-16808761,
16808799-16808858
Length = 439
Score = 26.2 bits (55), Expect = 8.2
Identities = 10/38 (26%), Positives = 20/38 (52%)
Frame = -3
Query: 331 YEIQGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 218
YE++ A+ A + DP +L+ W++I +T+
Sbjct: 113 YEVESAVQALEALGGLPDPCKTNSSLIEGSWQLIFTTR 150
>01_01_1010 -
7996921-7997673,7999212-7999399,7999688-7999784,
8000420-8000767,8001130-8001231,8001432-8001501,
8001747-8001802,8001891-8002010
Length = 577
Score = 26.2 bits (55), Expect = 8.2
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -2
Query: 296 VRQSRRSKCRWRESCQ 249
+R+SRR++CRW S Q
Sbjct: 226 MRRSRRTECRWARSTQ 241
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,913,584
Number of Sequences: 37544
Number of extensions: 225777
Number of successful extensions: 625
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 588739508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -