Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0723
         (372 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)              67   4e-12
SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)                      29   1.2  
SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7)                      29   1.2  
SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)                  28   2.8  
SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3)                     27   4.9  
SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.9  
SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)                 26   8.5  

>SB_50671| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 403

 Score = 67.3 bits (157), Expect = 4e-12
 Identities = 29/52 (55%), Positives = 38/52 (73%)
 Frame = +2

Query: 215 LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
           +L +Y  L    D++ A YIW+DGSGE +RCK RTL+  PK+ +DLPIWNFD
Sbjct: 14  VLEKYQRLD-QGDRVQALYIWVDGSGEGIRCKSRTLDKPPKSHEDLPIWNFD 64


>SB_7865| Best HMM Match : Mucin (HMM E-Value=1.2)
          Length = 2527

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -2

Query: 209  WTALRSGSWLKPAPIESSDYLLFWYALYQPF 117
            W     GSWL+  P+    +LLF Y   Q F
Sbjct: 1880 WEDTEEGSWLREYPVTLIQFLLFLYNNVQQF 1910


>SB_4830| Best HMM Match : Rad10 (HMM E-Value=9.7)
          Length = 231

 Score = 29.1 bits (62), Expect = 1.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +3

Query: 42  NTFSRNIQHSHRGNISRHNRAL 107
           NT +  IQHS+ G +  HN AL
Sbjct: 110 NTITDRIQHSNMGEVDNHNHAL 131


>SB_6850| Best HMM Match : TPR_2 (HMM E-Value=1.7e-08)
          Length = 523

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 15/48 (31%), Positives = 26/48 (54%)
 Frame = +2

Query: 212 TLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 355
           TL  +  +L  P+  +L TY ++    +HLR  ++ L++I KA    P
Sbjct: 20  TLTGKVGELESPS-ALLWTYFFLSQHYDHLRDTEKALDYINKAIDHTP 66


>SB_55214| Best HMM Match : DUF1665 (HMM E-Value=3)
          Length = 452

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +1

Query: 160 DSIGAGFNQLPERSAVQNATESIQ*SSTAG*QDSRHLHLDR 282
           D + + +  LP  S  + A +S + + TAG +DSR   LDR
Sbjct: 38  DPVSSHYRTLPSESQRERALDSSESALTAGSEDSR-CRLDR 77


>SB_26841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1109

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 12/19 (63%), Positives = 13/19 (68%)
 Frame = +2

Query: 275  WIDGSGEHLRCKDRTLNFI 331
            +I GS EHL C DRT  FI
Sbjct: 1090 YICGSPEHLHCDDRTKLFI 1108


>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1308

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 19/48 (39%), Positives = 28/48 (58%)
 Frame = -1

Query: 168  DRIFGLSSILVCAVSAILKQVRHDYVLKCSLDASVEYCAKTYLRKVLS 25
            DR     S++  +V A+   +R D  +  S+D SVE+CAK  LR +LS
Sbjct: 898  DRCAKALSVVDLSV-ALSVALRVDLSVDLSVDLSVEHCAKA-LRVILS 943


>SB_23379| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 970

 Score = 27.1 bits (57), Expect = 4.9
 Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = +2

Query: 158 KILSGPVLTNSPNAVLSKTLLSR--YNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFI 331
           + LS PVL+ S   ++    ++R  ++ LP+   +   T  + + S  HL+  D+  N +
Sbjct: 543 RCLSAPVLSESDPRLMLLYDVNRADHSLLPILDQEANGTLAFFEKSSTHLKTDDQEFNIL 602

Query: 332 PK 337
           P+
Sbjct: 603 PQ 604


>SB_5072| Best HMM Match : Aldedh (HMM E-Value=2.4e-14)
          Length = 266

 Score = 26.2 bits (55), Expect = 8.5
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 7   SKHFTLRQNLS*IRFRAIFNTRIEGTFQDIIVPYL 111
           ++H  +R  +  +R+ A F T+IEG    + VP++
Sbjct: 140 AEHVDIRLAVDFLRYMAGFATKIEGRTVQVSVPFM 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,474,101
Number of Sequences: 59808
Number of extensions: 246092
Number of successful extensions: 626
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)