Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0723
         (372 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical pr...    63   5e-11
Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical pr...    60   4e-10
Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical pr...    60   4e-10
AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...    59   9e-10
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...    59   9e-10
AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine syn...    54   2e-08
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr...    28   2.4  
Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical p...    26   9.9  
U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical pr...    26   9.9  
U97551-4|AAB52859.2|  154|Caenorhabditis elegans Groundhog (hedg...    26   9.9  

>Z82259-3|CAB05127.1|  368|Caenorhabditis elegans Hypothetical
           protein C28D4.3 protein.
          Length = 368

 Score = 63.3 bits (147), Expect = 5e-11
 Identities = 26/56 (46%), Positives = 35/56 (62%)
 Frame = +2

Query: 203 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
           L +  +  +  LP    K  ATY+WIDG+GEHLR K RT+N  P+   + PIWN+D
Sbjct: 12  LGQATIDHFMGLPAHPTKCQATYVWIDGTGEHLRAKTRTINTKPQYLSEYPIWNYD 67


>Z80223-3|CAB02317.1|  369|Caenorhabditis elegans Hypothetical
           protein F26D10.10 protein.
          Length = 369

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 25/56 (44%), Positives = 33/56 (58%)
 Frame = +2

Query: 203 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
           L +  +  +  LP    K  ATY+WIDG+GE LR K RT N  P+   + PIWN+D
Sbjct: 12  LGQATIDHFMGLPAHPSKCQATYVWIDGTGEQLRAKTRTFNLKPQYLSEYPIWNYD 67


>Z29560-1|CAA82655.1|  367|Caenorhabditis elegans Hypothetical
           protein K03H1.1 protein.
          Length = 367

 Score = 60.5 bits (140), Expect = 4e-10
 Identities = 26/56 (46%), Positives = 37/56 (66%)
 Frame = +2

Query: 203 LSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
           L   ++ ++  L     KI ATY+WIDG+GE+LR K RT + +PK  +D PIWN+D
Sbjct: 12  LGTAVIDQFLGLRPHPTKIQATYVWIDGTGENLRSKTRTFDKLPKRIEDYPIWNYD 67


>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score = 59.3 bits (137), Expect = 9e-10
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = +2

Query: 263 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
           A YIWIDGSGE++R K RT +F P  P+ LPIWNFD
Sbjct: 30  ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFD 65


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score = 59.3 bits (137), Expect = 9e-10
 Identities = 24/36 (66%), Positives = 28/36 (77%)
 Frame = +2

Query: 263 ATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
           A YIWIDGSGE++R K RT +F P  P+ LPIWNFD
Sbjct: 33  ALYIWIDGSGENIRAKTRTFDFEPTDPEKLPIWNFD 68


>AC006618-2|AAK68249.1|  340|Caenorhabditis elegans Glutamine
           synthetase (glutamate-ammonia ligase) protein 1 protein.
          Length = 340

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 21/34 (61%), Positives = 26/34 (76%)
 Frame = +2

Query: 269 YIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFD 370
           YIWID + E++R K +T +F PK P DLPIWNFD
Sbjct: 35  YIWIDATQENMRGKTKTFDFEPKTPSDLPIWNFD 68


>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
           protein ZK154.5 protein.
          Length = 1105

 Score = 27.9 bits (59), Expect = 2.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +2

Query: 116 KMADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLP 247
           K  +  HT  E  P+IL  P++ + P  +      + +N+L  P
Sbjct: 375 KQEEQEHTNGEKKPEILDEPIIQDEPRTMRPHEHCAIFNNLSTP 418


>Z82282-10|CAB05277.2|  600|Caenorhabditis elegans Hypothetical
           protein T07G12.6 protein.
          Length = 600

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +3

Query: 30  KPFVNTFSRNIQHSHRGNISRHNRALPVS 116
           KP +     +I  S+R NI  HNR + +S
Sbjct: 349 KPVLTVSDSDITASNRNNIDDHNRVIELS 377


>U97552-5|AAQ01520.1|  605|Caenorhabditis elegans Hypothetical
           protein W05H7.4a protein.
          Length = 605

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +2

Query: 122 ADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHL 301
           A  A  K++ N  IL GP ++N       + + +    LPL   K +     I  +    
Sbjct: 50  AGLAALKLKPNRGILRGPAISNLNQRGTRRLIFADTRGLPLVHVKEIERIAAIHSNVADY 109

Query: 302 RCKDR 316
           RC +R
Sbjct: 110 RCSER 114


>U97552-3|AAQ01521.1|  663|Caenorhabditis elegans Hypothetical
           protein W05H7.4b protein.
          Length = 663

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 17/65 (26%), Positives = 27/65 (41%)
 Frame = +2

Query: 122 ADTAHTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHL 301
           A  A  K++ N  IL GP ++N       + + +    LPL   K +     I  +    
Sbjct: 108 AGLAALKLKPNRGILRGPAISNLNQRGTRRLIFADTRGLPLVHVKEIERIAAIHSNVADY 167

Query: 302 RCKDR 316
           RC +R
Sbjct: 168 RCSER 172


>U97551-4|AAB52859.2|  154|Caenorhabditis elegans Groundhog
           (hedgehog-like family)protein 14 protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 9.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = +2

Query: 197 AVLSKTLLSRYNDLPLPAD 253
           A+ S T+ + Y+DLP PAD
Sbjct: 9   AISSATVFAAYDDLPKPAD 27


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,262,454
Number of Sequences: 27780
Number of extensions: 189202
Number of successful extensions: 537
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 535612900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)