Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0723
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   0.88 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.5  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   2.7  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    21   3.5  
EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.7  
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.7  
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.7  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.7  
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.7  
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    21   4.7  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              21   4.7  
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.7  
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    21   4.7  

>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 23.4 bits (48), Expect = 0.88
 Identities = 8/19 (42%), Positives = 15/19 (78%)
 Frame = -1

Query: 81  SLDASVEYCAKTYLRKVLS 25
           ++D + ++C KT +RKV+S
Sbjct: 195 NIDGAEDHCNKTAVRKVIS 213


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 22.6 bits (46), Expect = 1.5
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 303 GAKIAP*ISYLKLPKICLYGTSM 371
           GA +A  +  LK+P+ CL+G S+
Sbjct: 524 GAVVAGIVG-LKMPRYCLFGDSV 545


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 2.7
 Identities = 9/26 (34%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
 Frame = +2

Query: 236 LPLPADKILATYIWIDGS--GEHLRC 307
           +PL   ++L T +W+ G+  G   RC
Sbjct: 80  IPLYVCRVLHTTVWVAGAQRGNEQRC 105


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 3.5
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +2

Query: 218 LSRYNDLPLPA 250
           LS YND P+PA
Sbjct: 151 LSDYNDKPIPA 161


>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 163 IGMPGKKNTITYQCCPEPYVDV 184


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 16/64 (25%), Positives = 25/64 (39%)
 Frame = +2

Query: 8   RNILRSDKTFRKYVFAQYSTLASREHFKT*SCLTCFKMADTAHTKIEDNPKILSGPVLTN 187
           RN    +  +RK++        S    +  +C  C    D AHT ++  PK    P    
Sbjct: 44  RNNGEEEAYYRKHLLKDADGRVSCPVLRAYTCPICGACGDIAHT-VKYCPKGTKNPGTLA 102

Query: 188 SPNA 199
           + NA
Sbjct: 103 TVNA 106


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 231 IGMPGKKNTITYQCCPEPYVDV 252


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 21.0 bits (42), Expect = 4.7
 Identities = 7/22 (31%), Positives = 13/22 (59%)
 Frame = -1

Query: 336 LGMKFKVRSLHLRCSPEPSIQM 271
           +GM  K  ++  +C PEP + +
Sbjct: 231 IGMPGKKNTITYQCCPEPYVDV 252


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,871
Number of Sequences: 438
Number of extensions: 2313
Number of successful extensions: 13
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)