Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q618I8 Cluster: Putative uncharacterized protein CBG146...    36   1.3  
UniRef50_Q4QGK0 Cluster: Surface antigen protein 2, putative; n=...    33   5.2  
UniRef50_A3DKV3 Cluster: Metallophosphoesterase precursor; n=1; ...    33   6.8  
UniRef50_Q16FJ6 Cluster: Nuclear pore complex protein nup214; n=...    33   9.0  
UniRef50_Q5K9Z3 Cluster: L-serine ammonia-lyase, putative; n=2; ...    33   9.0  
UniRef50_P53617 Cluster: Protein NRD1; n=5; Saccharomycetales|Re...    33   9.0  
UniRef50_Q7V9J7 Cluster: tRNA uridine 5-carboxymethylaminomethyl...    33   9.0  

>UniRef50_Q618I8 Cluster: Putative uncharacterized protein CBG14643;
           n=1; Caenorhabditis briggsae|Rep: Putative
           uncharacterized protein CBG14643 - Caenorhabditis
           briggsae
          Length = 498

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 20/55 (36%), Positives = 30/55 (54%)
 Frame = +3

Query: 222 IILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPA 386
           I+ T+EKPS T   T TT  + + T      E+P  +    IPTE++  PS +P+
Sbjct: 150 ILTTSEKPSPT---TDTTVSEPAITEASTEPETPEPSTFEPIPTELVVTPSEIPS 201


>UniRef50_Q4QGK0 Cluster: Surface antigen protein 2, putative; n=8;
           Leishmania|Rep: Surface antigen protein 2, putative -
           Leishmania major
          Length = 570

 Score = 33.5 bits (73), Expect = 5.2
 Identities = 23/71 (32%), Positives = 28/71 (39%)
 Frame = +3

Query: 219 DIILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGE 398
           D   TT KP  T   T+T  K  +TT  E   E        A PT    AP+     T  
Sbjct: 418 DCTTTTTKPPTT---TTTPTKPPATTTTEAPAEPTTTTEAPAEPTTTTEAPAEPTTTTEA 474

Query: 399 PLDDGITTDVP 431
           P +   TT+ P
Sbjct: 475 PAEPTTTTEAP 485


>UniRef50_A3DKV3 Cluster: Metallophosphoesterase precursor; n=1;
           Staphylothermus marinus F1|Rep: Metallophosphoesterase
           precursor - Staphylothermus marinus (strain ATCC 43588 /
           DSM 3639 / F1)
          Length = 723

 Score = 33.1 bits (72), Expect = 6.8
 Identities = 16/57 (28%), Positives = 24/57 (42%)
 Frame = +3

Query: 231 TTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGEP 401
           TT  P++T+  T+TT    S T+      +      +  PT      +  PA TG P
Sbjct: 627 TTTPPTITTTTTTTTTTTTSPTITTPPSTTTTTTTTTTFPTTTTTTTTTPPATTGSP 683


>UniRef50_Q16FJ6 Cluster: Nuclear pore complex protein nup214; n=1;
           Aedes aegypti|Rep: Nuclear pore complex protein nup214 -
           Aedes aegypti (Yellowfever mosquito)
          Length = 1798

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 16/47 (34%), Positives = 30/47 (63%)
 Frame = +3

Query: 228 LTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNA 368
           LT  +    ++ T+  +K+ESTT+++ LKE   L++++A  TE L +
Sbjct: 629 LTDLQQRCKTLNTTIGSKEESTTIIKNLKELQDLSVQAAESTESLTS 675


>UniRef50_Q5K9Z3 Cluster: L-serine ammonia-lyase, putative; n=2;
           Filobasidiella neoformans|Rep: L-serine ammonia-lyase,
           putative - Cryptococcus neoformans (Filobasidiella
           neoformans)
          Length = 425

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 23/63 (36%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +3

Query: 243 PSVTSIETSTTAKQESTTVVE-QLKESPMLNLRSAIPTEILNAPSLVPADTGEPL-DDGI 416
           PS+TSI TS    + ++  ++  L  SP L    ++P   L +PS  PA+T   L D  I
Sbjct: 273 PSITSIATSLGCARVASRALDIALGLSPSLPPPISLPPSPLPSPSSSPAETSSSLPDPTI 332

Query: 417 TTD 425
           T+D
Sbjct: 333 TSD 335


>UniRef50_P53617 Cluster: Protein NRD1; n=5; Saccharomycetales|Rep:
           Protein NRD1 - Saccharomyces cerevisiae (Baker's yeast)
          Length = 575

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/44 (31%), Positives = 25/44 (56%)
 Frame = +3

Query: 228 LTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEI 359
           ++    +  S + S   KQ S  ++  LK+SP LNL  ++PT++
Sbjct: 154 ISNNTANTASQQLSLDPKQRSKQILSNLKKSPPLNLNISLPTDL 197


>UniRef50_Q7V9J7 Cluster: tRNA uridine 5-carboxymethylaminomethyl
           modification enzyme gidA; n=34; cellular organisms|Rep:
           tRNA uridine 5-carboxymethylaminomethyl modification
           enzyme gidA - Prochlorococcus marinus
          Length = 667

 Score = 32.7 bits (71), Expect = 9.0
 Identities = 14/46 (30%), Positives = 29/46 (63%)
 Frame = +3

Query: 222 IILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEI 359
           I+  +  P+V ++   T  +Q S  +++ L+E+P L+LR A+ T++
Sbjct: 87  ILNASRGPAVWALRAQTDKRQYSIEMLQMLQETPNLSLREAMVTDL 132


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 597,877,061
Number of Sequences: 1657284
Number of extensions: 10420448
Number of successful extensions: 28684
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 26807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28611
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 56198352344
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)