Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5 prot...    23   3.2  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   4.2  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   7.4  
EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    21   9.8  

>AY675073-1|AAV74190.1|  533|Tribolium castaneum chitinase 5
           protein.
          Length = 533

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 225 ILTTEKPSVTSIETSTTAKQESTTV 299
           + TT KP     E ST+  Q +TTV
Sbjct: 427 VQTTPKPGQWVPEKSTSTTQRTTTV 451


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 4/61 (6%)
 Frame = +3

Query: 243 PSVTSIETSTTAKQESTTVVEQLK----ESPMLNLRSAIPTEILNAPSLVPADTGEPLDD 410
           P   + ET      + +T+ +  K     SP+ +    +   + N P+L PA  G  L +
Sbjct: 14  PECENPETELLVSTKRSTISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73

Query: 411 G 413
           G
Sbjct: 74  G 74


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like protein
            protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 433  SGTSVVMPSSNGSPVSAGTRDGAL 362
            +  S V  ++N  P +AGT  GA+
Sbjct: 1013 TSNSSVNANTNNIPTNAGTTPGAI 1036


>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
 Frame = +3

Query: 330 NLRSAIP-TEILNAPSLVPADTGEPLDD 410
           +LR  +P TE  + PS +P    E  DD
Sbjct: 196 SLRCVVPPTEDCDVPSTIPPPPPEEDDD 223


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,992
Number of Sequences: 336
Number of extensions: 2688
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18634795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)