Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0721
(706 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po... 30 0.28
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 28 1.5
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha... 27 3.5
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch... 26 4.6
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 26 6.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 8.0
SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom... 25 8.0
>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 658
Score = 30.3 bits (65), Expect = 0.28
Identities = 33/158 (20%), Positives = 62/158 (39%), Gaps = 5/158 (3%)
Frame = +3
Query: 237 EKPSVTSIETSTTAKQESTTV---VEQLKESPMLNLRSAIPTEILNAPSLVPADTGEPLD 407
E ++ ++ET+TT E+TT+ VE +PM+ + E + P + T P+
Sbjct: 97 ETTTIPTVETTTTPMVETTTITPMVETTTITPMVEAMITLMEETMTTP-MEETTTILPM- 154
Query: 408 DGITTDVPXXXXXXXXXXXXXXXXXXXIEVSETPVIESFAXXXXXXXXXXXPKVSTEHEI 587
+TT + +E TP++E+ + +T
Sbjct: 155 AAMTTPM---EETTTTTPMVETTTIPTVETMTTPMVEAMTILPMAAMTTPMEETTTTPME 211
Query: 588 EVTTKDLEQT--TSSIAKSNSATEVTSHTEISSLPIET 695
E TT + +T T + + TEV + +S++ T
Sbjct: 212 ETTTTPMVETMITPMVEAMTTPTEVVGRSMVSTIRTTT 249
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 4/52 (7%)
Frame = +3
Query: 228 LTTEKPSVTSIETSTTAKQESTTVVEQLKE----SPMLNLRSAIPTEILNAP 371
+TT + I T TT +E TT+ ++E +PM+ + +P + P
Sbjct: 43 ITTMTIPMEEITTMTTPMEEITTITTPMEETTTITPMVETTTILPMAAMTTP 94
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/55 (23%), Positives = 30/55 (54%)
Frame = +3
Query: 228 LTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADT 392
+TT + I T TT +E+TT+ ++ + +L + +A+ T ++ ++ +T
Sbjct: 53 ITTMTTPMEEITTITTPMEETTTITPMVETTTILPM-AAMTTPMVETTTIPTVET 106
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -1
Query: 433 SGTSVVMPSSNGSPVSAGTRDGALSISVGI 344
SG SV++P NG R AL+IS GI
Sbjct: 434 SGCSVILPPINGDSDVVSVRGPALNISEGI 463
>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 884
Score = 26.6 bits (56), Expect = 3.5
Identities = 19/65 (29%), Positives = 28/65 (43%)
Frame = +3
Query: 237 EKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGI 416
E+ S I+TS E+ + +E+ K P+ PT +P T LDD
Sbjct: 538 EERSFEQIKTSIHIAPENISAIEESKSVPL-------PTSFATT---IPGSTSAALDDQQ 587
Query: 417 TTDVP 431
TT+ P
Sbjct: 588 TTEAP 592
>SPBC21D10.06c |map4||cell agglutination protein
Map4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 948
Score = 26.2 bits (55), Expect = 4.6
Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Frame = +3
Query: 567 VSTEHEIEVTTKDLEQTTSSIAKSNSA-----TEVTSHTEISSL 683
+STE E+E TK + T+S + S TE + +EISS+
Sbjct: 337 LSTEVEVEYFTKTITDTSSIVTYSTGVETLYETETITSSEISSI 380
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.8 bits (54), Expect = 6.0
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = +2
Query: 383 SRHRGAVR*WHNY*CTRNILNHRGNRN 463
S+H G+ + WH++ R+ H N N
Sbjct: 415 SKHAGSTQEWHSHTTPRSTSKHENNLN 441
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +3
Query: 225 ILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADT 392
+ + S TS ++ STT +P N S +PT +++ L A++
Sbjct: 375 LTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANS 430
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/56 (23%), Positives = 24/56 (42%)
Frame = +3
Query: 225 ILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADT 392
+ + S TS ++ STT +P N S +PT +++ L A++
Sbjct: 489 LTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSYNTSSVLPTSSVSSTPLSSANS 544
>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1325
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/48 (27%), Positives = 21/48 (43%)
Frame = +3
Query: 240 KPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVP 383
K SV ++ + T+ + +SP+ N + PT N PS P
Sbjct: 812 KASVANMSALNKSTNNETSDSKPSLKSPLFNFSADAPTFTFNKPSETP 859
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,497,179
Number of Sequences: 5004
Number of extensions: 44760
Number of successful extensions: 138
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 129
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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