Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727           31   0.89 
04_04_0338 + 24509698-24510042,24510373-24510490,24510539-245106...    29   4.8  
04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899           28   6.3  
01_01_0355 + 2810340-2813112,2813213-2813637                           28   6.3  

>04_01_0538 - 6982833-6983101,6983528-6983912,6983999-6984727
          Length = 460

 Score = 31.1 bits (67), Expect = 0.89
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 135 GRPLQMARVRFHLPWLLKTAKSSGIGGNA 49
           GRP ++     HLPW L+ A+ +G+G  A
Sbjct: 127 GRPARVLVFDPHLPWALRVARDAGVGAAA 155


>04_04_0338 +
           24509698-24510042,24510373-24510490,24510539-24510642,
           24510823-24511491
          Length = 411

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -3

Query: 371 WSVEYLSWYSGPQIKHWAFFELFYNCSAFLFSCCTSFD 258
           W V  L W +GP +    F  + Y CS  L  C  + D
Sbjct: 57  WGVAQLGWVAGPAVM-LLFGAVIYCCSVLLVECYRTGD 93


>04_01_0549 - 7112770-7112774,7112835-7113219,7113306-7113899
          Length = 327

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -2

Query: 135 GRPLQMARVRFHLPWLLKTAKSSGIGGNA 49
           GRP ++     HLPW  + A+  G+G  A
Sbjct: 82  GRPARVLVYDPHLPWARRVARDDGVGAAA 110


>01_01_0355 + 2810340-2813112,2813213-2813637
          Length = 1065

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +3

Query: 330 NLRSAIPTEILNAPSLVPADTG-EPLDDGITTDV 428
           NL  A+P+ + N  SL+  D G   LD  I TD+
Sbjct: 232 NLSGALPSSLYNLSSLMGFDAGNNKLDGSIATDI 265


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,139,340
Number of Sequences: 37544
Number of extensions: 293611
Number of successful extensions: 739
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 738
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)