Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)               31   1.2  
SB_41144| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)           28   8.5  

>SB_8083| Best HMM Match : Lectin_C (HMM E-Value=3.8e-22)
          Length = 3445

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 20/68 (29%), Positives = 35/68 (51%), Gaps = 5/68 (7%)
 Frame = +3

Query: 240  KPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLV-----PADTGEPL 404
            KP+VT    STT   ++ T + +  + P+  L++  PT IL   ++V     P  T  P+
Sbjct: 1135 KPTVTP---STTISPKTETSITEATKPPVDQLKTKQPTTILGETTIVPETTIPESTAAPV 1191

Query: 405  DDGITTDV 428
            +  IT ++
Sbjct: 1192 ETTITPEI 1199



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 17/60 (28%), Positives = 26/60 (43%)
 Frame = +3

Query: 252 TSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGITTDVP 431
           T++   TT + E++T ++    +       A P E    PS+ P  T  P  D  TT  P
Sbjct: 252 TTVVPDTTVEPETSTTLKPTDVTEKPEASPATPAEYSTTPSVQPELTEAPQTDYPTTASP 311


>SB_41144| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 159

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 23/71 (32%), Positives = 34/71 (47%)
 Frame = +3

Query: 219 DIILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGE 398
           D   TT    + S +T T  K   TT   Q+ ++P+      +P +I +A  LVP DT  
Sbjct: 25  DFCFTTRTTGILSQDTQTPVKT-FTTPDTQILKTPL------VPLDI-SASRLVPLDTQT 76

Query: 399 PLDDGITTDVP 431
           PL++   T  P
Sbjct: 77  PLNNFYNTGYP 87


>SB_49137| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 323

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
 Frame = +3

Query: 285 ESTTVVEQLKESPMLNL---RSAIPTEILNAPSLVPADTGEPLDDGITTDV 428
           ++T V   + E+  L++   RSA+  ++LNA  L P D   PLD  + T +
Sbjct: 183 KATIVQPMITEASTLSMCFCRSAMVVKLLNAQELPPKDDTGPLDVFVKTQL 233


>SB_53775| Best HMM Match : Involucrin2 (HMM E-Value=7.1e-12)
          Length = 1879

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/31 (41%), Positives = 20/31 (64%)
 Frame = +3

Query: 228  LTTEKPSVTSIETSTTAKQESTTVVEQLKES 320
            LT+++ S  S+E   T+K+ES   VEQ + S
Sbjct: 1794 LTSKEESAPSVEQQQTSKEESDLCVEQQQTS 1824


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,770,986
Number of Sequences: 59808
Number of extensions: 339496
Number of successful extensions: 792
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 790
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)