Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF399513-1|AAK94998.1|  215|Homo sapiens olfactory receptor prot...    31   5.3  
AB065844-1|BAC06062.1|  310|Homo sapiens seven transmembrane hel...    31   5.3  
AB065656-1|BAC05882.1|  310|Homo sapiens seven transmembrane hel...    31   5.3  
AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellu...    30   7.0  

>AF399513-1|AAK94998.1|  215|Homo sapiens olfactory receptor
           protein.
          Length = 215

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 697 LVSIGKELISVWDVTSVALFDFAIELVVCSRSLVVTSISCSVDTLG 560
           ++     LISVW ++S+A  D +I    C  + ++ ++SC VDT G
Sbjct: 83  VIGFTSSLISVWVISSLAFCDSSINHFFCDTTALL-ALSC-VDTFG 126


>AB065844-1|BAC06062.1|  310|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 697 LVSIGKELISVWDVTSVALFDFAIELVVCSRSLVVTSISCSVDTLG 560
           ++     LISVW ++S+A  D +I    C  + ++ ++SC VDT G
Sbjct: 150 VIGFTSSLISVWVISSLAFCDSSINHFFCDTTALL-ALSC-VDTFG 193


>AB065656-1|BAC05882.1|  310|Homo sapiens seven transmembrane helix
           receptor protein.
          Length = 310

 Score = 30.7 bits (66), Expect = 5.3
 Identities = 16/46 (34%), Positives = 27/46 (58%)
 Frame = -1

Query: 697 LVSIGKELISVWDVTSVALFDFAIELVVCSRSLVVTSISCSVDTLG 560
           ++     LISVW ++S+A  D +I    C  + ++ ++SC VDT G
Sbjct: 150 VIGFTSSLISVWVISSLAFCDSSINHFFCDTTALL-ALSC-VDTFG 193


>AF043724-1|AAC39862.1|  359|Homo sapiens hepatitis A virus cellular
           receptor 1 protein.
          Length = 359

 Score = 30.3 bits (65), Expect = 7.0
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 1/69 (1%)
 Frame = +3

Query: 228 LTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEI-LNAPSLVPADTGEPL 404
           + T  P+VT++ TSTT    +T     +  +  +   + +PT + ++  + VP  T  P 
Sbjct: 134 IVTTVPTVTTVRTSTTVPTTTTVPTTTVPTTMSIPTTTTVPTTMTVSTTTSVPTTTSIP- 192

Query: 405 DDGITTDVP 431
               TT VP
Sbjct: 193 ---TTTSVP 198


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 88,265,363
Number of Sequences: 237096
Number of extensions: 1722665
Number of successful extensions: 3243
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3020
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3243
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8175213644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)