Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    32   0.46 
Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical pr...    31   0.80 
AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical ...    31   1.1  
AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical ...    29   2.4  
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    28   5.7  
Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical pr...    27   9.9  
AC006695-7|AAM48553.1|  724|Caenorhabditis elegans Titin family ...    27   9.9  

>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
           protein Y40C5A.3 protein.
          Length = 2344

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
 Frame = +3

Query: 222 IILTTEKPSVTSIETSTTAK--QESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTG 395
           ++ TTE+ + T+ ET+T+A   +E+TT     + S      +   T +   P   P  + 
Sbjct: 184 LVTTTEEITTTTSETTTSATTTEETTTEPSTTEPSTTEEFTTEETTTVSTNPPTTPELSD 243

Query: 396 EPLDDGITTDV 428
           +P D    TD+
Sbjct: 244 DPTDGNDATDI 254


>Z49207-3|CAA89071.1|  927|Caenorhabditis elegans Hypothetical
           protein R07E3.6 protein.
          Length = 927

 Score = 31.1 bits (67), Expect = 0.80
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 5/67 (7%)
 Frame = +3

Query: 231 TTEKPS--VTSIETSTTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVP-ADTGEP 401
           TT+KP+   T+  TSTT    +TT  E    + +      +P + L    + P  D+GEP
Sbjct: 118 TTQKPTTSTTTTTTSTTPVPTTTTTTEAATTTVLTTTTEELPKQQLAGRLVQPDMDSGEP 177

Query: 402 --LDDGI 416
              +DGI
Sbjct: 178 ESAEDGI 184


>AF016687-5|AAC48093.1|  709|Caenorhabditis elegans Hypothetical
           protein T21D12.11 protein.
          Length = 709

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 38/153 (24%), Positives = 56/153 (36%), Gaps = 1/153 (0%)
 Frame = +3

Query: 225 ILTTEKPSVTSIETSTTAKQESTTVVEQLKESPMLNLRSA-IPTEILNAPSLVPADTGEP 401
           +  T +P  TS+ETS+T    +T   E    +   N  S+   TE     S VPA T EP
Sbjct: 497 VSVTYEPETTSLETSSTKVSSTTATGEPASTTMEANEHSSTFETE----SSTVPA-TNEP 551

Query: 402 LDDGITTDVPXXXXXXXXXXXXXXXXXXXIEVSETPVIESFAXXXXXXXXXXXPKVSTEH 581
           +    T+ +P                   +E  E       +           P  S   
Sbjct: 552 IT---TSFIPSTTDLSIITSTEEAKISTTMETDELSTTTESSYSTTQFTTFKIPTSSFST 608

Query: 582 EIEVTTKDLEQTTSSIAKSNSATEVTSHTEISS 680
                T   EQTT S  +++SAT  T   ++S+
Sbjct: 609 LPMEGTSTKEQTTLSTEETSSATTATIFEKLST 641


>AF000194-3|AAK39379.1|  191|Caenorhabditis elegans Hypothetical
           protein ZC328.5 protein.
          Length = 191

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
 Frame = +3

Query: 231 TTEKPSVTSIETSTT--AKQESTTVVEQLKE 317
           TTE PS T++E+STT  +K     V E +KE
Sbjct: 31  TTEPPSTTTVESSTTRDSKAPCMAVFENMKE 61


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +3

Query: 219 DIILTTEKPSVTSIETSTTAKQESTT 296
           D+I TT  PS+ +IET+TT     TT
Sbjct: 272 DVISTTTTPSIDAIETTTTGFDAVTT 297


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/71 (26%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
 Frame = +3

Query: 231 TTEKPSVTSIETS----TTAKQESTTVVEQLKESPMLNLRSAIPTEILNAPSLVPADTGE 398
           TTEKP +T   T+    TT++ ESTT V    E P          + +        +   
Sbjct: 492 TTEKPVITEGSTTNKQPTTSEHESTTEVPTTTEEPTTTTGQHKTEKAITTEEPTTTEESS 551

Query: 399 PLDDGITTDVP 431
             ++  TT+ P
Sbjct: 552 TTEEVTTTEEP 562


>Z81015-5|CAB02661.1|  342|Caenorhabditis elegans Hypothetical
           protein C11E4.7 protein.
          Length = 342

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 597 TKDLEQTTSSIAKSNSATEVTSHTEISS 680
           T D+ +  SSI+  N+AT++T H   SS
Sbjct: 57  TLDINKLMSSISSLNTATKITPHISSSS 84


>AC006695-7|AAM48553.1|  724|Caenorhabditis elegans Titin family
           protein 1, isoform a protein.
          Length = 724

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +2

Query: 8   IIEEEDTSLFDHNPAFPPIPDDLAVLSNHGR*NR 109
           IIE E+++L     AF P+   +  L N+GR +R
Sbjct: 317 IIELEESTLTTSTTAFDPMTTSMRALGNNGRNSR 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,933,627
Number of Sequences: 27780
Number of extensions: 261331
Number of successful extensions: 935
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 799
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)