Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    23   2.8  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    22   6.5  
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...    21   8.6  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +3

Query: 639 NSATEVTSHTEISSLPI 689
           N+ TEV  +TE+ S+P+
Sbjct: 147 NTNTEVVINTEVKSIPV 163


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +3

Query: 615 TTSSIAKSNSATEVTSHTEISSL 683
           T+ S  K+NS TEV++  ++  L
Sbjct: 560 TSKSFIKANSQTEVSNSKKLDRL 582


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = -3

Query: 395 PGVCWYKRWSVE 360
           P   WYK W VE
Sbjct: 206 PKTPWYKGWKVE 217


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,801
Number of Sequences: 438
Number of extensions: 3224
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21683070
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)