Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0721
         (706 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /...    29   3.0  
At1g03350.1 68414.m00314 BSD domain-containing protein contains ...    28   5.2  
At2g27350.5 68415.m03295 OTU-like cysteine protease family prote...    28   6.9  
At2g27350.4 68415.m03294 OTU-like cysteine protease family prote...    28   6.9  
At2g27350.3 68415.m03293 OTU-like cysteine protease family prote...    28   6.9  
At2g27350.2 68415.m03292 OTU-like cysteine protease family prote...    28   6.9  
At2g27350.1 68415.m03291 OTU-like cysteine protease family prote...    28   6.9  
At4g08180.3 68417.m01353 oxysterol-binding family protein simila...    27   9.2  
At4g08180.2 68417.m01352 oxysterol-binding family protein simila...    27   9.2  
At4g08180.1 68417.m01351 oxysterol-binding family protein simila...    27   9.2  

>At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /
           phosphoglyceride transfer family protein contains Pfam
           PF00650 : CRAL/TRIO domain; contains Pfam PF03765 :
           CRAL/TRIO, N-terminus; similar to cytosolic factor
           (Phosphatidylinositol/phosphatidylcholine transfer
           protein) (PI/PCTP) (SP:P24280) [Saccharomyces
           cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700
           come from this gene
          Length = 540

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
 Frame = +3

Query: 219 DIILTTEKPSVTSIETSTTA----KQESTTVVEQLKESPMLNLRSA--IPTEILNAPSLV 380
           + ++T E P   ++E   T     K+E TTVVE+++E      +    + TE + A ++ 
Sbjct: 132 EAVVTEEAPKAETVEAVVTEEIIPKEEVTTVVEKVEEETKEEEKKTEDVVTEEVKAETIE 191

Query: 381 PADTGEPLDDGI 416
             D  E +D  I
Sbjct: 192 VEDEDESVDKDI 203


>At1g03350.1 68414.m00314 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 470

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 15/41 (36%), Positives = 27/41 (65%), Gaps = 3/41 (7%)
 Frame = +3

Query: 582 EIEVTTKDLEQTTSSIAKSNSATEVTSH---TEISSLPIET 695
           ++  T KD  ++T S+AK ++  EVTS    TE+S++ ++T
Sbjct: 289 DVSETVKDEVESTYSVAKVSTQDEVTSADSVTEVSNVGLKT 329


>At2g27350.5 68415.m03295 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 PSVTSIETSTTAKQESTTVVE--QLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGI 416
           P VT  E  T  KQE  TVVE  +  ++  + + S  P +  +   LV A+      +GI
Sbjct: 41  PPVTIDEEITDEKQEEVTVVEKAECSDAKDVAVDSDEPADREDDEGLVVAENVHVQSEGI 100

Query: 417 TTDVP 431
             D P
Sbjct: 101 DCDSP 105


>At2g27350.4 68415.m03294 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 388

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 PSVTSIETSTTAKQESTTVVE--QLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGI 416
           P VT  E  T  KQE  TVVE  +  ++  + + S  P +  +   LV A+      +GI
Sbjct: 41  PPVTIDEEITDEKQEEVTVVEKAECSDAKDVAVDSDEPADREDDEGLVVAENVHVQSEGI 100

Query: 417 TTDVP 431
             D P
Sbjct: 101 DCDSP 105


>At2g27350.3 68415.m03293 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 506

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 PSVTSIETSTTAKQESTTVVE--QLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGI 416
           P VT  E  T  KQE  TVVE  +  ++  + + S  P +  +   LV A+      +GI
Sbjct: 41  PPVTIDEEITDEKQEEVTVVEKAECSDAKDVAVDSDEPADREDDEGLVVAENVHVQSEGI 100

Query: 417 TTDVP 431
             D P
Sbjct: 101 DCDSP 105


>At2g27350.2 68415.m03292 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 505

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 PSVTSIETSTTAKQESTTVVE--QLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGI 416
           P VT  E  T  KQE  TVVE  +  ++  + + S  P +  +   LV A+      +GI
Sbjct: 41  PPVTIDEEITDEKQEEVTVVEKAECSDAKDVAVDSDEPADREDDEGLVVAENVHVQSEGI 100

Query: 417 TTDVP 431
             D P
Sbjct: 101 DCDSP 105


>At2g27350.1 68415.m03291 OTU-like cysteine protease family protein
           contains Pfam profile PF02338: OTU-like cysteine
           protease
          Length = 505

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = +3

Query: 243 PSVTSIETSTTAKQESTTVVE--QLKESPMLNLRSAIPTEILNAPSLVPADTGEPLDDGI 416
           P VT  E  T  KQE  TVVE  +  ++  + + S  P +  +   LV A+      +GI
Sbjct: 41  PPVTIDEEITDEKQEEVTVVEKAECSDAKDVAVDSDEPADREDDEGLVVAENVHVQSEGI 100

Query: 417 TTDVP 431
             D P
Sbjct: 101 DCDSP 105


>At4g08180.3 68417.m01353 oxysterol-binding family protein similar
          to SP|Q969R2 Oxysterol-binding protein 2 {Homo
          sapiens}; contains Pfam profiles PF00169: PH domain,
          PF01237: Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 26 TSLFDHNPAFPPIPDDLAVLSNH 94
          T++ DH+P+ PP+P+    L N+
Sbjct: 8  TTVSDHSPSMPPLPEPQPPLPNY 30


>At4g08180.2 68417.m01352 oxysterol-binding family protein similar
          to SP|Q969R2 Oxysterol-binding protein 2 {Homo
          sapiens}; contains Pfam profiles PF00169: PH domain,
          PF01237: Oxysterol-binding protein
          Length = 813

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 26 TSLFDHNPAFPPIPDDLAVLSNH 94
          T++ DH+P+ PP+P+    L N+
Sbjct: 8  TTVSDHSPSMPPLPEPQPPLPNY 30


>At4g08180.1 68417.m01351 oxysterol-binding family protein similar
          to SP|Q969R2 Oxysterol-binding protein 2 {Homo
          sapiens}; contains Pfam profiles PF00169: PH domain,
          PF01237: Oxysterol-binding protein
          Length = 814

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = +2

Query: 26 TSLFDHNPAFPPIPDDLAVLSNH 94
          T++ DH+P+ PP+P+    L N+
Sbjct: 8  TTVSDHSPSMPPLPEPQPPLPNY 30


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,047,248
Number of Sequences: 28952
Number of extensions: 235426
Number of successful extensions: 603
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 603
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)