Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0710
         (641 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx mori|...    46   0.001
UniRef50_Q1VLA3 Cluster: Putative uncharacterized protein; n=1; ...    36   0.83 
UniRef50_P54554 Cluster: Uncharacterized oxidoreductase yqjQ; n=...    33   4.4  
UniRef50_UPI0000E87CFB Cluster: glycosyltransferase; n=1; Methyl...    33   5.9  

>UniRef50_A0MNZ0 Cluster: NADPH oxidoreductase; n=1; Bombyx
           mori|Rep: NADPH oxidoreductase - Bombyx mori (Silk moth)
          Length = 191

 Score = 45.6 bits (103), Expect = 0.001
 Identities = 19/22 (86%), Positives = 20/22 (90%)
 Frame = -1

Query: 377 F*LLSWVEELTAHLVLSGYWSP 312
           F LL WV+ELTAHLVLSGYWSP
Sbjct: 154 FLLLRWVDELTAHLVLSGYWSP 175


>UniRef50_Q1VLA3 Cluster: Putative uncharacterized protein; n=1;
           Psychroflexus torquis ATCC 700755|Rep: Putative
           uncharacterized protein - Psychroflexus torquis ATCC
           700755
          Length = 183

 Score = 35.9 bits (79), Expect = 0.83
 Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
 Frame = -1

Query: 551 LSVIHLCYIFFLSAIEFRLTTLSHFTF---TIRRCFSRSLIPYLWDTARSLLIG 399
           L+++ LC +F    I F LT L  F+F   +I   F + +IP  W TA S++ G
Sbjct: 16  LTIVALCQVFLTPLIAFTLTYLFDFSFFGESINITFQKEMIP--WITAASIMYG 67


>UniRef50_P54554 Cluster: Uncharacterized oxidoreductase yqjQ; n=2;
           Bacillus|Rep: Uncharacterized oxidoreductase yqjQ -
           Bacillus subtilis
          Length = 259

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 19/51 (37%), Positives = 27/51 (52%)
 Frame = -3

Query: 408 VNRQELQTSFFLIT*LGGRAHSPPGVKWLLEPIDIYNANTPRTFSHKRQIS 256
           VN   +QT FF I   GG      G +W+L+P D+    T   F+ KR+I+
Sbjct: 180 VNPGPIQTDFFSIADKGGDYAKNVG-RWMLDPDDVAAQITAAIFTKKREIN 229


>UniRef50_UPI0000E87CFB Cluster: glycosyltransferase; n=1;
           Methylophilales bacterium HTCC2181|Rep:
           glycosyltransferase - Methylophilales bacterium HTCC2181
          Length = 350

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 26/84 (30%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
 Frame = +1

Query: 325 PLNTRWAVSSSTQLSN*KKTSLEFLPI--NSDLAVSHRYGIK-DLEKHRRIVKVKWDKVV 495
           PL ++W  + +T L N KKT   ++P     D+A +H++ +K +++     +   WDK V
Sbjct: 38  PLFSQWGFAEAT-LRNIKKTDFVWVPCFRQRDIASAHKWCLKHNIKLIIDPLISSWDKRV 96

Query: 496 NLNSMADKKKM*HKCITESIALSN 567
           N  +    KK  HK      AL N
Sbjct: 97  NEKTNTLSKKSIHKIKQLESALFN 120


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 658,794,697
Number of Sequences: 1657284
Number of extensions: 12640346
Number of successful extensions: 26761
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 26099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26743
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48126133708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)