Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0710
         (641 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    24   1.2  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    23   1.6  
AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor su...    23   1.6  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    22   3.7  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    21   8.6  

>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 12/22 (54%), Positives = 16/22 (72%)
 Frame = +3

Query: 555 CIEQWQMSVTSLQKRPWARKSA 620
           CIE WQ S +SL+ R  ++KSA
Sbjct: 227 CIEIWQSSESSLRPRS-SQKSA 247


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = +3

Query: 525 NVTQMYHREHCIEQWQMSVTSLQKRPWARKSA 620
           N  Q+   E C+   Q   TSL  R W R +A
Sbjct: 543 NKKQILGGEACLWSEQFDETSLDTRLWPRAAA 574


>AF025669-1|AAB81523.1|  243|Tribolium castaneum GABA receptor
           subunit protein.
          Length = 243

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = -3

Query: 609 GPRVSSGVTSRTFAIAQCNALCDTFVLHFFF 517
           GP V  GVT    +I+  + +   F L F+F
Sbjct: 62  GPPVEVGVTMYVLSISSLSEVKMDFTLDFYF 92


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +1

Query: 433 YGIKDLEKHRRIVKVKW 483
           YG+K L+K  R V++ W
Sbjct: 900 YGLKVLDKSGRSVQLSW 916



 Score = 21.8 bits (44), Expect = 4.9
 Identities = 7/26 (26%), Positives = 18/26 (69%)
 Frame = +1

Query: 376  KKTSLEFLPINSDLAVSHRYGIKDLE 453
            KKTS E++ +++++ +   + + DL+
Sbjct: 1530 KKTSTEWIQVSNNVKLGQNFVLLDLD 1555


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 5/8 (62%), Positives = 7/8 (87%)
 Frame = -2

Query: 592 WSDVTDIC 569
           WSD+ D+C
Sbjct: 38  WSDIADVC 45


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 160,609
Number of Sequences: 336
Number of extensions: 3328
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16448590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)