Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0710
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      28   1.00 
SPAC8C9.10c |||ribosome biogenesis protein Rrp14-N|Schizosacchar...    28   1.3  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   3.0  
SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces pombe...    27   3.0  
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom...    26   4.0  
SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2 |Sc...    25   7.0  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    25   7.0  
SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransfer...    25   9.3  
SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 28.3 bits (60), Expect = 1.00
 Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -1

Query: 533 CYIFFLSAIEFR--LTTLSHFTFTIRRCFSRSLIPYLWDTARSLLIGKNSKL 384
           C+ F+ S   F   L T  HF F  R C  + L+     T  S L+ ++++L
Sbjct: 109 CFFFYFSLFSFFSFLFTSLHFNFFFRLCRHKHLLDIPDQTTLSSLLHRHTRL 160


>SPAC8C9.10c |||ribosome biogenesis protein
           Rrp14-N|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 154

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +3

Query: 534 QMYHREHCIEQWQMSVTSLQKRPWARK 614
           ++Y+REH   QW+   ++L+++   RK
Sbjct: 25  KLYYREHTANQWKQKKSTLEEKKERRK 51


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/50 (24%), Positives = 24/50 (48%)
 Frame = +1

Query: 379 KTSLEFLPINSDLAVSHRYGIKDLEKHRRIVKVKWDKVVNLNSMADKKKM 528
           K  LE  P+    A++  YG K  +    ++K+    +  ++S +  KK+
Sbjct: 281 KEKLENFPVEKLRAIAESYGFKSSDSKATLIKIVESCLDAIDSRSQSKKL 330


>SPBC1683.06c |||uridine ribohydrolase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 310

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 360 GGRAHSPPGVKWLLEPIDIYN 298
           GG  H P  V WLL P DIY+
Sbjct: 235 GGPLHDPNTVMWLLRP-DIYS 254


>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 682

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = +1

Query: 55  TLTTNFHIKYHTLSINEFCVNTS 123
           TL+   H +Y   S NEFCVN S
Sbjct: 227 TLSAGLHFRYGA-SYNEFCVNHS 248


>SPBC21.05c |ral2||Ras guanyl-nucleotide exchange factor Ral2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 611

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 211 LLTSQYLIASRQK*IVWLYPLTRD 140
           +L+  YL +SRQ  ++W+Y L ++
Sbjct: 325 ILSGIYLTSSRQAFVLWVYSLDKE 348


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 6   SVSSYRTVFKFHRHGAHINDQL 71
           S+ ++R   + H    HINDQL
Sbjct: 211 SIETFRLTDRLHESNRHINDQL 232


>SPAC890.07c |rmt1|prmt1|type I protein arginine N-methyltransferase
           Rmt1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 339

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 16/63 (25%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
 Frame = -1

Query: 188 CVAAKIDSMAVPTDARPQQAP-ALVFTQNSLIDRV*YLIW-KLVVNVCSMPMKFEYSSVA 15
           CV   +D   V  +     +P  +  T+N  +    +L W  +  + C  P+KF     +
Sbjct: 216 CVILDLDLKTVKKEDLAFSSPFEITATRNDFVHA--FLAWFDIEFSACHKPIKFSTGPFS 273

Query: 14  RYT 6
           RYT
Sbjct: 274 RYT 276


>SPAC6B12.07c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 456

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 19/57 (33%), Positives = 28/57 (49%)
 Frame = -1

Query: 224 KRFKFIDFTILDCVAAKIDSMAVPTDARPQQAPALVFTQNSLIDRV*YLIWKLVVNV 54
           KRF F + + L   A  I  +  PT   PQQA  L +   SL      ++ K+++NV
Sbjct: 20  KRFVF-ELSSLGLSAETISKLMAPTTVDPQQAITLSY---SLGKEGHIVVPKIIINV 72


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,240
Number of Sequences: 5004
Number of extensions: 55688
Number of successful extensions: 133
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)