Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0710
         (641 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099     30   1.4  
10_08_0573 + 18872720-18872781,18873261-18873610,18873917-188743...    30   1.8  
12_02_0973 + 24959440-24959451,24959962-24962195,24962539-249626...    29   3.1  
04_04_1039 - 30321567-30321626,30321729-30322217,30323150-303232...    29   4.1  
08_02_0235 + 14627648-14628889                                         28   5.5  
03_03_0108 + 14514460-14515722                                         28   5.5  
10_08_0935 + 21670372-21671396,21672057-21672987                       28   7.2  

>08_02_0661 - 19780036-19781002,19781244-19781298,19782760-19783099
          Length = 453

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +3

Query: 108 LRKHECWGLLWSRVSGYSHTIYFCRDAIKYCEVN 209
           + + E  G  W + +GY  T+Y+C   I    VN
Sbjct: 419 VERREALGRYWDKPNGYEQTMYYCNYRILIVSVN 452


>10_08_0573 +
           18872720-18872781,18873261-18873610,18873917-18874334,
           18875172-18877180,18877390-18877398,18880291-18880398,
           18880399-18880469,18880769-18881785
          Length = 1347

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
 Frame = -3

Query: 378 FLIT*LGGRAHSPPGVKWL-LEPIDIYNANTPRTFSHKRQISTLELRLHLK 229
           F+   LG R H     KW+ +   +I +AN P  F   RQ+S  +L  HLK
Sbjct: 291 FIAASLGHRLHQKDKSKWVAILQEEICDAN-PNYFIRARQLSYAQLHSHLK 340


>12_02_0973 + 24959440-24959451,24959962-24962195,24962539-24962653,
            24963146-24963943,24964140-24964422,24964500-24964951,
            24965744-24965870,24965950-24966074,24966188-24966858,
            24966976-24967093,24967177-24967293,24967564-24967658,
            24968152-24968303,24968858-24968913,24969001-24969218,
            24969842-24970239,24970345-24970628,24970730-24970836,
            24970882-24970968,24971729-24971990,24972228-24972503,
            24973197-24973254,24973437-24973756,24973889-24973999,
            24974183-24974350,24974494-24974622,24974731-24974820,
            24974934-24975040,24975133-24975281,24975584-24975666,
            24975749-24975844,24975957-24976079,24976180-24976263,
            24976371-24976511,24976652-24976951,24977386-24977453,
            24977540-24977642,24979363-24979524,24979613-24981230,
            24981270-24981661,24981689-24981991,24982078-24982161,
            24982296-24982448,24982678-24982841,24982915-24983062,
            24983209-24983331,24983409-24983496,24983686-24983867
          Length = 4177

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = -1

Query: 515  SAIEFRLTTLSHFTFTIRRCFSRSLIPYLWDTARSLLIGKNSKLV 381
            SA+E     L+H   T R  F +    Y W   R++ + K S L+
Sbjct: 2628 SAVELNGVLLNHALVTFRELFLKCAQHYSWYVLRAIYVTKGSSLL 2672


>04_04_1039 -
           30321567-30321626,30321729-30322217,30323150-30323278,
           30323438-30323758
          Length = 332

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -1

Query: 272 ISDKLAHSNLGYI*KEKRFKFIDFTILDCVAAKIDSMAVPTDA 144
           +S K AH  +GY+ +E    + +F + D  A KID++  P  A
Sbjct: 238 LSPKFAHRVVGYLEEEAIHSYTEF-LKDLEAGKIDNVPAPAIA 279


>08_02_0235 + 14627648-14628889
          Length = 413

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 16/41 (39%), Positives = 24/41 (58%)
 Frame = -1

Query: 500 RLTTLSHFTFTIRRCFSRSLIPYLWDTARSLLIGKNSKLVF 378
           RLT ++HF F ++  +SRS +  L+ T    L G   K+VF
Sbjct: 79  RLTKVAHF-FPVKTTYSRSRLAELYMTRIVCLHGVPKKIVF 118


>03_03_0108 + 14514460-14515722
          Length = 420

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +3

Query: 564 QWQMSVTSLQKRPWARKSATRMQSGN 641
           +W++   SL++R W R  A R +SG+
Sbjct: 346 RWRLDAYSLRRRKWTRVCAARPRSGS 371


>10_08_0935 + 21670372-21671396,21672057-21672987
          Length = 651

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 354 RAHSPPGVKWLLEPIDIYNANTPRTFSHKRQISTLELRLH 235
           R  +PPGV   +EP+ +  A      S    + T+E+ +H
Sbjct: 582 RCSTPPGVPRAVEPVAVAAAVPATVMSKPPPVDTVEMAIH 621


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,704,770
Number of Sequences: 37544
Number of extensions: 349246
Number of successful extensions: 648
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 640
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)