Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0710
         (641 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase fa...    29   2.0  
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea...    29   3.5  
At5g64210.1 68418.m08066 alternative oxidase 2, mitochondrial (A...    27   8.0  
At3g50380.1 68416.m05511 expressed protein                             27   8.0  

>At2g40850.1 68415.m05043 phosphatidylinositol 3- and 4-kinase
           family protein contains Pfam profile PF00454:
           Phosphatidylinositol 3- and 4-kinase
          Length = 561

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 3/56 (5%)
 Frame = -1

Query: 359 VEELTAHLV-LSGYWS-P*TSTTQIRHAPSHISDKLAHSNLGY-I*KEKRFKFIDF 201
           + EL A+L+   G+   P T+   I H P H+SD  + S++ Y +   +RF   DF
Sbjct: 185 IRELAAYLLDYQGFSGVPPTALVSISHVPFHVSDAFSFSSMPYKVASLQRFVGHDF 240


>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
           family protein contains 7 WD-40 repeats (PF00400);
           similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
           sapiens]
          Length = 482

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = -2

Query: 220 VLSLLTSQYLIASRQK*IVWLYPLTRDHNKPQHSCLRK 107
           +LSL   +Y++A  +   V+ Y LT    KP+H+C+ K
Sbjct: 410 LLSLEKGEYIVAGSEDSNVYFYDLT----KPKHTCVNK 443


>At5g64210.1 68418.m08066 alternative oxidase 2, mitochondrial
           (AOX2) nearly identical to SP|O22049
          Length = 353

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 15/43 (34%), Positives = 25/43 (58%)
 Frame = -1

Query: 272 ISDKLAHSNLGYI*KEKRFKFIDFTILDCVAAKIDSMAVPTDA 144
           IS +LAH  +GY+ +E    + +F + D    KI+++A P  A
Sbjct: 259 ISPRLAHRVVGYLEEEAIHSYTEF-LKDIDNGKIENVAAPAIA 300


>At3g50380.1 68416.m05511 expressed protein
          Length = 3071

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = -1

Query: 566  LLNAMLSVIHLCYIFFLSAIEFRLTTLSHFTFTIRRCFSRSLIPYLWDTARSLLIGKNSK 387
            LL++++ V H+  +     +E     ++H   T+R    R +  Y W   R++ I K S 
Sbjct: 2686 LLHSVVKVPHIKNM----VVELNGVLVTHALITVRELLLRCVKHYSWYAMRAIYIAKGSP 2741

Query: 386  LV 381
            L+
Sbjct: 2742 LL 2743


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,436,024
Number of Sequences: 28952
Number of extensions: 290948
Number of successful extensions: 663
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 663
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1324661040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)