Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0709
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit...    72   3e-14
SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    26   1.9  
SPBC2A9.06c |||di-trans,poly-cis-decaprenylcistransferase|Schizo...    25   4.4  
SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid Pmp31|Schi...    25   4.4  
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom...    24   5.8  
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    24   5.8  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    24   7.6  
SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyce...    24   7.6  

>SPBC409.05 |skp1|psh1, sph1|SCF ubiquitin ligase complex subunit
           Skp1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 71.7 bits (168), Expect = 3e-14
 Identities = 29/40 (72%), Positives = 36/40 (90%)
 Frame = +2

Query: 11  ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 130
           ANMI+GK+PE+IRKTFNI NDFT  EE+Q+RKENEW E++
Sbjct: 122 ANMIRGKSPEDIRKTFNIPNDFTPEEEEQIRKENEWAEDR 161


>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 180 HSDNT*RCLQIAFIMVYFS 124
           H+D+  RCL++AF   YFS
Sbjct: 746 HADDFFRCLEVAFDYPYFS 764


>SPBC2A9.06c |||di-trans,
           poly-cis-decaprenylcistransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 258

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 11/31 (35%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
 Frame = -1

Query: 277 CTYFY--IIYNTNKFTWFKLIILYCHGKNSL 191
           C  F+  I+Y TN  T+FK ++ Y + +  L
Sbjct: 226 CEIFHDPILYTTNYLTFFKALVHYSNAEMRL 256


>SPCC1183.09c |pmp31|mug75|plasma membrane proteolipid
           Pmp31|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 105

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -1

Query: 157 LANSIYYGLLFFTPFILFTNLIFFCSSEIILNV 59
           L++ +   L FF PFI+      FC+++ ++N+
Sbjct: 6   LSDFLLIVLSFFVPFIVVGIRRGFCTADFLINI 38


>SPAC3G9.14 |sak1||transcriptional repressor
           Sak1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 766

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 129 FSSHHSFSLRT*SSSAAVKSFLMLNVLRISSGVFPLIMFAA 7
           ++SH S  L+  S +AA+ S L+  +LR++        F A
Sbjct: 490 YASHSSCLLQVKSETAAIFSNLLSRLLRVNDTAHAAARFLA 530


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
            protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 53   TFNIKNDFTAAEEDQVRKENEWCE 124
            T ++ N FT A  D+  KEN   E
Sbjct: 1200 TPSVNNSFTTANNDECSKENSQIE 1223


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 134 FTFLHTIHSLYEPDL 90
           F  +H++H LY PD+
Sbjct: 806 FGLVHSVHELYGPDI 820


>SPCC1620.05 |||Rab geranylgeranyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 344

 Score = 23.8 bits (49), Expect = 7.6
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +2

Query: 86  EEDQVRKENEWCEEK*TIINAICKHL 163
           E  ++  EN WC E      A+CK L
Sbjct: 276 ELHEMEPENRWCCESLVNYEALCKTL 301


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,263,386
Number of Sequences: 5004
Number of extensions: 24056
Number of successful extensions: 53
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 53
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)