Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0709
(346 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0114 - 20942068-20942241,20942454-20942524,20942642-209426... 70 4e-13
11_04_0210 + 14882358-14882419,14882785-14882815,14884197-14884370 70 6e-13
07_01_0331 + 2343570-2344064 63 6e-11
07_03_1325 + 25830838-25831440 59 8e-10
07_01_0329 - 2318000-2318473 59 1e-09
09_02_0185 - 5500208-5500711 58 1e-09
09_04_0097 - 14573499-14574110,14574977-14575017,14575424-145756... 58 2e-09
06_01_0095 - 785876-786376 58 2e-09
09_02_0187 - 5533728-5534225 56 7e-09
07_01_0330 + 2319014-2319532 56 1e-08
09_02_0188 - 5540598-5541116 52 9e-08
08_02_0477 + 17618033-17618542 51 2e-07
08_02_0475 + 17610651-17611160 51 2e-07
09_02_0186 - 5520641-5521144 51 3e-07
09_02_0180 - 5417864-5418397 49 9e-07
07_03_0040 + 12723576-12724148 49 9e-07
10_08_0145 + 15181510-15181995,15182110-15182286 49 1e-06
07_03_1333 + 25861182-25861718 47 5e-06
02_02_0124 + 7023890-7024486 44 2e-05
07_03_1332 + 25854171-25854695 43 6e-05
09_02_0190 + 5556223-5556705 42 1e-04
07_03_1331 + 25851255-25851803 42 1e-04
06_01_0094 + 779097-779155,779882-781019,781732-782115,782842-78... 35 0.020
03_01_0046 - 384444-384460,384649-384770,385144-385301,385379-38... 34 0.034
07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331 33 0.079
02_05_1018 - 33530834-33530926,33531036-33531098,33531193-335312... 27 3.0
11_06_0640 + 25744048-25745021,25745128-25745273,25747870-257479... 26 9.1
>09_06_0114 -
20942068-20942241,20942454-20942524,20942642-20942660,
20944009-20944362
Length = 205
Score = 70.1 bits (164), Expect = 4e-13
Identities = 30/39 (76%), Positives = 35/39 (89%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
A+MIKGKTPEEIRKTFNIKNDFT EE++VR+EN+W E
Sbjct: 167 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEVRRENQWAFE 205
>11_04_0210 + 14882358-14882419,14882785-14882815,14884197-14884370
Length = 88
Score = 69.7 bits (163), Expect = 6e-13
Identities = 29/39 (74%), Positives = 35/39 (89%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
A+MIKGKTPEEIRKTFNIKNDFT EE+++R+EN+W E
Sbjct: 50 ADMIKGKTPEEIRKTFNIKNDFTPEEEEEIRRENQWAFE 88
>07_01_0331 + 2343570-2344064
Length = 164
Score = 62.9 bits (146), Expect = 6e-11
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
AN+IKGK+PE+IRK F IKNDFT EE+++RKEN W E
Sbjct: 126 ANLIKGKSPEQIRKEFGIKNDFTPEEEEEIRKENTWAFE 164
>07_03_1325 + 25830838-25831440
Length = 200
Score = 59.3 bits (137), Expect = 8e-10
Identities = 25/42 (59%), Positives = 32/42 (76%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 130
R A+ IKGKTPEEIRK FNI ND + EE+++R+EN W E+
Sbjct: 159 RVADTIKGKTPEEIRKEFNIVNDLSKEEEEEIRRENPWAFEQ 200
>07_01_0329 - 2318000-2318473
Length = 157
Score = 58.8 bits (136), Expect = 1e-09
Identities = 26/39 (66%), Positives = 32/39 (82%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
AN+IKGK+PE+IRK F IKNDFT EE+++RKEN W E
Sbjct: 120 ANLIKGKSPEQIRKEFGIKNDFT-PEEEEIRKENTWAFE 157
>09_02_0185 - 5500208-5500711
Length = 167
Score = 58.4 bits (135), Expect = 1e-09
Identities = 25/39 (64%), Positives = 31/39 (79%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
A++IKGKT +EIR TF I NDFT EE+++RKENEW E
Sbjct: 128 ADLIKGKTVQEIRDTFGIVNDFTPEEEEEIRKENEWAFE 166
>09_04_0097 -
14573499-14574110,14574977-14575017,14575424-14575616,
14575697-14575837,14575970-14576197,14576297-14576552,
14576866-14577069,14577157-14577245,14577346-14577416,
14577498-14577579,14577653-14577715,14578018-14578155
Length = 705
Score = 57.6 bits (133), Expect = 2e-09
Identities = 25/38 (65%), Positives = 30/38 (78%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
RAA++I+GKT EEIR FNI NDFT EE ++RKEN W
Sbjct: 664 RAADLIRGKTVEEIRAEFNIANDFTPEEEAEIRKENAW 701
>06_01_0095 - 785876-786376
Length = 166
Score = 57.6 bits (133), Expect = 2e-09
Identities = 24/38 (63%), Positives = 30/38 (78%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
R A +IKGK+PE+IR+ F IKND T EE+Q+RKE EW
Sbjct: 127 RTAELIKGKSPEQIREMFGIKNDHTPEEEEQIRKEYEW 164
>09_02_0187 - 5533728-5534225
Length = 165
Score = 56.0 bits (129), Expect = 7e-09
Identities = 24/39 (61%), Positives = 30/39 (76%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
A++IKGKT +EIR F I NDFT EE+++RKENEW E
Sbjct: 126 ADLIKGKTVQEIRDMFGIVNDFTPEEEEEIRKENEWAFE 164
>07_01_0330 + 2319014-2319532
Length = 172
Score = 55.6 bits (128), Expect = 1e-08
Identities = 22/38 (57%), Positives = 31/38 (81%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
R A+M+ GKTPE++R+TF+I+NDFT EE +R+EN W
Sbjct: 131 RVADMMSGKTPEQMRETFSIENDFTPEEEAAIRQENAW 168
>09_02_0188 - 5540598-5541116
Length = 172
Score = 52.4 bits (120), Expect = 9e-08
Identities = 22/41 (53%), Positives = 29/41 (70%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
RAA++IK PE++R+ F I+NDFT EE +VR EN W E
Sbjct: 131 RAADLIKDMMPEQVREVFGIENDFTPEEEAEVRNENAWAYE 171
>08_02_0477 + 17618033-17618542
Length = 169
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +2
Query: 8 AANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
AA++IK + EE+R+ FNI NDFT EE +VRKEN W
Sbjct: 129 AADLIKDMSVEEVREVFNITNDFTPEEEAEVRKENAW 165
>08_02_0475 + 17610651-17611160
Length = 169
Score = 51.2 bits (117), Expect = 2e-07
Identities = 22/37 (59%), Positives = 28/37 (75%)
Frame = +2
Query: 8 AANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
AA++IK + EE+R+ FNI NDFT EE +VRKEN W
Sbjct: 129 AADLIKDMSVEEVREVFNITNDFTPEEEAEVRKENAW 165
>09_02_0186 - 5520641-5521144
Length = 167
Score = 50.8 bits (116), Expect = 3e-07
Identities = 21/41 (51%), Positives = 28/41 (68%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
R A++IK PE++R+ F I+NDFT EE +VR EN W E
Sbjct: 126 RTADLIKDMMPEQVREVFGIENDFTPEEEAEVRNENAWAYE 166
>09_02_0180 - 5417864-5418397
Length = 177
Score = 49.2 bits (112), Expect = 9e-07
Identities = 21/37 (56%), Positives = 29/37 (78%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENE 115
R A+MIKGKT E++R+T I NDFT EE++ R+E+E
Sbjct: 137 RLADMIKGKTSEQMRQTLGITNDFTPEEEEEFRREDE 173
>07_03_0040 + 12723576-12724148
Length = 190
Score = 49.2 bits (112), Expect = 9e-07
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
+ A+M+KGKT EE+R+ NI+NDFT E+ ++++N W
Sbjct: 147 KVADMLKGKTSEEMRQILNIRNDFTEEEDKAIKEQNPW 184
>10_08_0145 + 15181510-15181995,15182110-15182286
Length = 220
Score = 48.8 bits (111), Expect = 1e-06
Identities = 20/39 (51%), Positives = 28/39 (71%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
A+ ++GK PEEIR F I+ND+T +E +VR+EN W E
Sbjct: 181 ADKMRGKKPEEIRDIFEIENDYTPEQEAEVRRENAWAFE 219
>07_03_1333 + 25861182-25861718
Length = 178
Score = 46.8 bits (106), Expect = 5e-06
Identities = 18/36 (50%), Positives = 27/36 (75%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
A+ IKGKTPEEIR FNI D T +++++++E+ W
Sbjct: 141 ADTIKGKTPEEIRTAFNIAYDLTEEDQEEIKEEDAW 176
>02_02_0124 + 7023890-7024486
Length = 198
Score = 44.4 bits (100), Expect = 2e-05
Identities = 19/36 (52%), Positives = 24/36 (66%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
A ++G+T E IR+ F I ND+T EE VRKEN W
Sbjct: 156 AACMRGRTVEGIRQVFGIANDYTDEEEQDVRKENSW 191
>07_03_1332 + 25854171-25854695
Length = 174
Score = 43.2 bits (97), Expect = 6e-05
Identities = 18/34 (52%), Positives = 26/34 (76%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKEN 112
A+ IKGKTPEEIR F I+ D TA +E ++++E+
Sbjct: 138 ADTIKGKTPEEIRTAFGIEYDLTAQDEKEIKEED 171
>09_02_0190 + 5556223-5556705
Length = 160
Score = 41.9 bits (94), Expect = 1e-04
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENEW 118
+ A M+ GK+PE++R+ F+I ND T EE ++R++ W
Sbjct: 120 KVAAMMTGKSPEQMREIFHIVNDLTPEEEKEIREDIAW 157
>07_03_1331 + 25851255-25851803
Length = 182
Score = 41.9 bits (94), Expect = 1e-04
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Frame = +2
Query: 11 ANMIK-GKTPEEIRKTFNIKNDFTAAEEDQVRKENEWCEEK 130
A IK GK +EIRK ++ DFT EE+++R+EN W E+
Sbjct: 142 ARKIKAGKAIDEIRKFLGVEKDFTKEEEEKIRRENAWAFEE 182
>06_01_0094 +
779097-779155,779882-781019,781732-782115,782842-783060
Length = 599
Score = 34.7 bits (76), Expect = 0.020
Identities = 21/38 (55%), Positives = 24/38 (63%)
Frame = -2
Query: 117 HSFSLRT*SSSAAVKSFLMLNVLRISSGVFPLIMFAAR 4
H+FSL SSS+ VKS +L V ISSG PLI A R
Sbjct: 401 HAFSLMI-SSSSGVKSLAILKVSLISSGDLPLISSAVR 437
>03_01_0046 -
384444-384460,384649-384770,385144-385301,385379-385479,
385748-385823,385983-386093,386165-386356,386729-387024,
388299-388497
Length = 423
Score = 33.9 bits (74), Expect = 0.034
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 11 ANMIKGKTPEEIRKTFNIKNDFTAAEE 91
A +I+GKTPEEIR F++ +D T E+
Sbjct: 206 ARIIEGKTPEEIRDIFHLPDDLTEEEK 232
>07_03_1327 + 25833927-25834391,25834943-25835340,25835395-25836331
Length = 599
Score = 32.7 bits (71), Expect = 0.079
Identities = 17/38 (44%), Positives = 26/38 (68%), Gaps = 1/38 (2%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFN-IKNDFTAAEEDQVRKENE 115
R A+ K KT EEIRKTF+ I+ + + EE++ ++E E
Sbjct: 113 RVADNSKAKTTEEIRKTFSTIEIELSDKEEEEQQQEEE 150
>02_05_1018 -
33530834-33530926,33531036-33531098,33531193-33531236,
33531973-33532118,33532262-33532281,33532365-33532500,
33532585-33532804,33532905-33533085,33533495-33533518,
33534127-33534341,33534425-33534705,33535987-33536210
Length = 548
Score = 27.5 bits (58), Expect = 3.0
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = -1
Query: 112 ILFTNLIFFCSSEIILNVERFTDFFRSLSFD 20
IL+T L +C IIL + T F + FD
Sbjct: 242 ILYTELYSYCVEFIILEGDNMTSIFSHIGFD 272
>11_06_0640 +
25744048-25745021,25745128-25745273,25747870-25747945,
25747996-25748230
Length = 476
Score = 25.8 bits (54), Expect = 9.1
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 133 LLFFTPFILFTNLIFFCSSEIILNVERFTDFFRSLSFDHVCGTR 2
LL T F L N++F S + V+ + + DHV GTR
Sbjct: 97 LLLSTYFFLCANVLFVTKSFCAIVVDVYFGALLAYYADHVFGTR 140
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,041,809
Number of Sequences: 37544
Number of extensions: 118528
Number of successful extensions: 300
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 295
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 299
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 494158076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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