Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0709
         (346 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)         27   5.4  
SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   7.1  
SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)                 26   7.1  

>SB_29935| Best HMM Match : Exo_endo_phos (HMM E-Value=3.3e-06)
          Length = 353

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = +2

Query: 32  TPEEIRKTFNIK--NDFTAAEEDQVRKENE 115
           T +E+R TFNIK  N F A E++   +  E
Sbjct: 297 TEKEVRNTFNIKLRNRFQALEQEDEEERGE 326


>SB_56012| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 354

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 8   AANMIKGKTPEEIRKTFNIKNDFTAAEED 94
           AA+++   +PEE    FNI  DF    ED
Sbjct: 35  AASLVTITSPEENSLVFNIARDFLVTPED 63


>SB_46456| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 667

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -1

Query: 163 KMLANSIYYGLLFFTPFILFTNLIFFCSSEI 71
           K   N +++G + +   +L T L F CSS++
Sbjct: 225 KSQVNVLFFGTMRYLIILLLTQLDFTCSSDV 255


>SB_69| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 662

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -1

Query: 325 LNDMKI*ILLKITMT*CTYFYIIYNTNKF 239
           LN +++ +LL    T  TYF I+YN + F
Sbjct: 369 LNTLRLVVLLWQAATEWTYFLIVYNLSVF 397


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,686,261
Number of Sequences: 59808
Number of extensions: 160344
Number of successful extensions: 371
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 371
length of database: 16,821,457
effective HSP length: 73
effective length of database: 12,455,473
effective search space used: 510674393
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)