Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= brS-0709
(346 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat... 23 0.77
AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase prot... 22 1.8
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 21 4.1
DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex det... 21 5.4
DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholi... 21 5.4
EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholi... 20 7.2
DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholi... 20 7.2
DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholi... 20 7.2
AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex det... 20 7.2
AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex det... 20 7.2
AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex det... 20 7.2
AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex det... 20 7.2
AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex det... 20 7.2
AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex det... 20 7.2
AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex det... 20 7.2
AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex det... 20 7.2
AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic ac... 20 7.2
EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholi... 20 9.5
>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
receptor protein.
Length = 1040
Score = 23.4 bits (48), Expect = 0.77
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -1
Query: 91 FFCSSEIILNVERFTDFFRSLSFDH 17
FF +S + N +RF F R++ DH
Sbjct: 241 FFSTSPELSNKQRFEYFTRTIPSDH 265
Score = 21.0 bits (42), Expect = 4.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Frame = -2
Query: 150 IAFIMVYFSSHHSFSLRT*SSSAAV 76
+AF+ +YF + ++ +LR S S +
Sbjct: 862 LAFVPLYFGTGNNVALRITSMSVTI 886
>AY242387-1|AAO72539.2| 693|Apis mellifera prophenoloxidase
protein.
Length = 693
Score = 22.2 bits (45), Expect = 1.8
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +2
Query: 35 PEEIRKTFNIKNDFTAAEEDQVRKENEWCEE 127
PE R I D+TA++ D + W E+
Sbjct: 172 PEGARVPIEIPRDYTASDLDVEHRVAYWRED 202
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.0 bits (42), Expect = 4.1
Identities = 9/37 (24%), Positives = 19/37 (51%)
Frame = +2
Query: 5 RAANMIKGKTPEEIRKTFNIKNDFTAAEEDQVRKENE 115
++ N K TP++ RKT ++ ++Q + E +
Sbjct: 781 QSPNSTKETTPKKERKTATTTQPVISSRKEQKKSEEK 817
>DQ325090-1|ABD14104.1| 178|Apis mellifera complementary sex
determiner protein.
Length = 178
Score = 20.6 bits (41), Expect = 5.4
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = -3
Query: 317 YENLNFIENHNDMMYLFLYNLQHKQI 240
Y N N N+N +Y Y + +QI
Sbjct: 91 YSNYNNYNNYNKKLYYKNYIINIEQI 116
>DQ026032-1|AAY87891.1| 566|Apis mellifera nicotinic acetylcholine
receptor alpha3subunit protein.
Length = 566
Score = 20.6 bits (41), Expect = 5.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Frame = +2
Query: 71 DFTAAEEDQVRKENEW 118
D T EED R + +W
Sbjct: 491 DHTKREEDSTRVKEDW 506
>EF127804-1|ABL67941.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 5 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 106 IFKSTCKIDIAWFPF 120
>EF127803-1|ABL67940.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 4 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 106 IFKSTCKIDITWFPF 120
>EF127801-1|ABL67938.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 2 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 106 IFKSTCKMDIAWFPF 120
>EF127800-1|ABL67937.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 1 protein.
Length = 461
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 106 IFKSTCKIDITWFPF 120
>DQ026036-1|AAY87895.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 174 IFKSTCKIDITWFPF 188
>DQ026035-1|AAY87894.1| 529|Apis mellifera nicotinic acetylcholine
receptor alpha6subunit protein.
Length = 529
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 174 IFKSTCKIDITWFPF 188
>AY569717-1|AAS86670.1| 397|Apis mellifera complementary sex
determiner protein.
Length = 397
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY569712-1|AAS86665.1| 408|Apis mellifera complementary sex
determiner protein.
Length = 408
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY569704-1|AAS86657.1| 426|Apis mellifera complementary sex
determiner protein.
Length = 426
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY569703-1|AAS86656.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY569701-1|AAS86654.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY569700-1|AAS86653.1| 407|Apis mellifera complementary sex
determiner protein.
Length = 407
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY569699-1|AAS86652.1| 396|Apis mellifera complementary sex
determiner protein.
Length = 396
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY569697-1|AAS86650.1| 413|Apis mellifera complementary sex
determiner protein.
Length = 413
Score = 20.2 bits (40), Expect = 7.2
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +3
Query: 27 ERLLKKSVKRSTLRMISLLQK 89
ERL+KK + LR I ++K
Sbjct: 54 ERLMKKMILEYELRRIREIEK 74
>AY500239-1|AAR92109.1| 555|Apis mellifera neuronal nicotinic
acetylcholine receptoralpha7-1 protein.
Length = 555
Score = 20.2 bits (40), Expect = 7.2
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 143 IFKSTCKIDITWFPF 157
>EF127805-1|ABL67942.1| 461|Apis mellifera nicotinic acetylcholine
receptor subunitalpha 6 transcript variant 6 protein.
Length = 461
Score = 19.8 bits (39), Expect = 9.5
Identities = 7/15 (46%), Positives = 8/15 (53%)
Frame = -3
Query: 170 IHKDACK*HLLWFTF 126
I K CK + WF F
Sbjct: 106 IFKSTCKMDVAWFPF 120
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 84,613
Number of Sequences: 438
Number of extensions: 1940
Number of successful extensions: 22
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used: 7812315
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)
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