Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0705
         (424 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.15 |||WD repeat protein, human WRDR85 family|Schizosaccha...    25   6.4  
SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual             24   8.5  
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar...    24   8.5  

>SPCC18.15 |||WD repeat protein, human WRDR85
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 310

 Score = 24.6 bits (51), Expect = 6.4
 Identities = 5/14 (35%), Positives = 12/14 (85%)
 Frame = +2

Query: 221 VRSKWRVHEFEIWS 262
           +++KW+ H++E W+
Sbjct: 133 IKNKWKEHDYEAWT 146


>SPCC645.10 |||ATP|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 484

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 17/54 (31%), Positives = 23/54 (42%)
 Frame = -2

Query: 312 KTESFIRSVTTRHIISVLHISNSWTRHLLLTYLMRRLDVTILGDVPSIMFTGVI 151
           KT  FI S ++      + ++  W R  LL      LDVT L  V  + F   I
Sbjct: 20  KTADFIESKSSSSSSLEVRLAGGWVRDKLLGLSSDDLDVT-LNKVTGVDFANSI 72


>SPBC1604.16c |||RNA-binding protein, G-patch type
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 199

 Score = 24.2 bits (50), Expect = 8.5
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = -2

Query: 318 HTKTESFIRSVTTRHIISVLHISNSWTRHLL 226
           ++K  +  +S+T  H++S  HISN +  HLL
Sbjct: 82  NSKKINHFKSMT--HLLSSQHISNKFQPHLL 110


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,390,749
Number of Sequences: 5004
Number of extensions: 24143
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 150383836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)