Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0705
         (424 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0710 + 10587969-10588069,10588181-10588262,10588362-105884...    28   2.7  
08_01_0654 - 5639419-5641449                                           27   6.2  
05_04_0392 - 20889699-20891726                                         27   6.2  

>03_02_0710 +
           10587969-10588069,10588181-10588262,10588362-10588414,
           10588828-10589315,10589415-10589575,10589699-10589896,
           10590091-10590277,10590355-10590611
          Length = 508

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -2

Query: 312 KTESFIRSVTTRHIISVL--HISNSWTRHLLLTYLMRRLDVTILGDVPSIMFTG 157
           K E F+R V    + +VL  HI ++    L L    +R  +   G++P  +FTG
Sbjct: 53  KLEPFLRRVVQEEVQNVLIRHIDSAHRLPLQLKTSSKRYKLQFQGNLPLTLFTG 106


>08_01_0654 - 5639419-5641449
          Length = 676

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 185 PKIVTSRRRIKYVRSKWRVHEFEIWSTEMICRVVTLRMKDSVLVWLGSK 331
           P  V  R    +VR + +  +  ++S E +  +V  RMK++   +LG K
Sbjct: 132 PFAVVDRNGKPHVRVEVKDGDVRVFSPEEVSAMVLTRMKETAEAYLGEK 180


>05_04_0392 - 20889699-20891726
          Length = 675

 Score = 27.1 bits (57), Expect = 6.2
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = +2

Query: 185 PKIVTSRRRIKYVRSKWRVHEFEIWSTEMICRVVTLRMKDSVLVWLGSK 331
           P  V  R    +VR + +  +  ++S E +  +V  RMK++   +LG K
Sbjct: 132 PFAVVDRNGKPHVRVEVKDGDVRVFSPEEVSAMVLTRMKETAEAYLGEK 180


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,795,666
Number of Sequences: 37544
Number of extensions: 144079
Number of successful extensions: 336
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 336
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)