Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0705
         (424 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.8  
SB_6324| Best HMM Match : MCM (HMM E-Value=0)                          27   4.8  
SB_24436| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  

>SB_39061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2362

 Score = 28.3 bits (60), Expect = 2.8
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -2

Query: 225 LTYLMRRLDVTILGDVPSIMFTGVILYP 142
           L  ++R+ DVT+ G+ P I F   +LYP
Sbjct: 555 LLLILRKNDVTLKGERPFIEFLDSVLYP 582


>SB_6324| Best HMM Match : MCM (HMM E-Value=0)
          Length = 1592

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +2

Query: 176  GTSPKIVTSRRRIKYVRSKWRVHEF 250
            G+  K+V  +R   YVR +W+ H+F
Sbjct: 1336 GSRFKVVRIQRNDPYVRGRWQCHDF 1360


>SB_24436| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -1

Query: 115 IIKVHSTILGFFCLVWVSLAPIDRTLVLNVWFI 17
           ++ V+ T L  +C VW+  +     L  + WFI
Sbjct: 29  VVIVYRTALAVYCFVWLVFSGFSTMLGGDTWFI 61


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,307,091
Number of Sequences: 59808
Number of extensions: 165817
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 289
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)