Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= brS-0705
         (424 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein...    27   5.5  
U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein ...    27   5.5  
U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein ...    27   5.5  
AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protei...    27   5.5  
AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protei...    27   5.5  
AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protei...    27   5.5  
Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical pr...    26   9.7  

>U23139-10|AAN65328.1|  558|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform c protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 18  INQTFSTKVLSIGASETQTKQKKPN 92
           IN+TF +K +S+GA+ T   +K+P+
Sbjct: 143 INETFRSKDVSVGANFTVVLKKEPD 167


>U23139-9|AAN65327.1|  632|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform b protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 18  INQTFSTKVLSIGASETQTKQKKPN 92
           IN+TF +K +S+GA+ T   +K+P+
Sbjct: 217 INETFRSKDVSVGANFTVVLKKEPD 241


>U23139-8|AAK31491.2| 1051|Caenorhabditis elegans Biotin protein
           ligase protein 1,isoform a protein.
          Length = 1051

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 18  INQTFSTKVLSIGASETQTKQKKPN 92
           IN+TF +K +S+GA+ T   +K+P+
Sbjct: 636 INETFRSKDVSVGANFTVVLKKEPD 660


>AY601658-1|AAS98223.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant d protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 18  INQTFSTKVLSIGASETQTKQKKPN 92
           IN+TF +K +S+GA+ T   +K+P+
Sbjct: 143 INETFRSKDVSVGANFTVVLKKEPD 167


>AY601657-1|AAS98222.1|  558|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (62.5 kD) alternative
           variant c protein.
          Length = 558

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 18  INQTFSTKVLSIGASETQTKQKKPN 92
           IN+TF +K +S+GA+ T   +K+P+
Sbjct: 143 INETFRSKDVSVGANFTVVLKKEPD 167


>AY601656-1|AAS98221.1|  632|Caenorhabditis elegans biotin protein
           ligase, holocarboxylasesynthetase (70.9 kD) alternative
           variant b protein.
          Length = 632

 Score = 27.1 bits (57), Expect = 5.5
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 18  INQTFSTKVLSIGASETQTKQKKPN 92
           IN+TF +K +S+GA+ T   +K+P+
Sbjct: 217 INETFRSKDVSVGANFTVVLKKEPD 241


>Z82096-7|CAB05033.2|  332|Caenorhabditis elegans Hypothetical
           protein ZK909.5 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +2

Query: 197 TSRRRIKYVRSKWRVHEFEIWSTEMICRVVTLR 295
           T++++IK +R K    EFEIW  + IC  + ++
Sbjct: 36  TAKKQIKSLRLK--TTEFEIWIQKFICIYLVIK 66


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,560,238
Number of Sequences: 27780
Number of extensions: 130679
Number of successful extensions: 271
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 271
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 271
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)